MmuINT0048829 @ mm10
Intron Retention
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:37016605-37019978:-
Coord C1 exon
chr6:37019916-37019978
Coord A exon
chr6:37016679-37019915
Coord C2 exon
chr6:37016605-37016678
Length
3237 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
CTCTGCTTTGGTTGCTGCAGTGT
3' ss Score
6.58
Exon sequences
Seq C1 exon
GCAGCCTTTTCTGATTTCCTACAAAGAAGTTCTAGAGATCTATCCAAACACGTCAAAGTTGTC
Seq A exon
GTGAGTATTGACTATATAGGTTCATTTCATTTGCATGTGAATATGAGTGTCACTCCCCCCACCCCCAATGCCAGTTGATACGTAGATTAATATATAGACAAATATATTAATCCCTGGGCTACATATAATTTGTCAATCATGTAGCTCATTCAACCATAAACATGCATCCTCTCTATGTGTCAGTCTCTGTTTTAGTTGCTGGAGTGAAATAAAGACTAGTTTTACTCCTAAAGAAATAATATGCTGGGATTATAGTCCTGTACTAAGTCCAGCAAAATGTTTAAAAAACACAGAGCTACTTTTATATAATATAAAAACAAGAGGAAATGATCCTTGAAAAGAAAACAACTAAGGATCGTAATAGAATAATATTTAGTAGGGCACTGGTAATGTTAACAATGTTAATAAACTAGAATATACAGTACTAATGTGATAGAAACGACTTCCTCATTCTTATAGGATGAAAAGTTCATTTTAAAAATGTTTCCAGTATTAAGAAGGCTGAGCTAGAAGGGATGTAAATTCAAGGCAACCAGCTGGACTGGACAGCTTGGTGAGAACCTGTCTCAAGAGAATGGAAAATTATAGAAATCTGATAGGCAAACATTTGCTAAGCTGCTGTTGCTGTTCCATCAGCGTTAATTTGTGCCCTGCTTTGAATCTCATACCGATTCTTCCTATAGAGTTTCTATGTCTTTATTGTAGCCATATGAATACTCAGGGCATTGTATGAGTTCAGTAACTTATCACAAAATCACAAAATATATGGCTTATAGAAAACTGTGCTTGAAAAATGATCCCCTTAAATCAACTGGGACAAGAGCTGAGTATTGCTGGTATTAGCTAACCTCATCATCCCTCCATGGTATTTCAACTCACATACAATGCCTTGTTGTTGTTTCTGGCTCTGGAAGGGATTGGGTAGCAAAGCTGCAGGCTTCATGGTAACCAGGAAGGGAGGGTGGGAAGAAAAAGGAAAGAAAAAGAGAGAAGAGGGAAAGAGGGAATAGAGAGATGTTCAATGACTGCTGAATGACTGACCAGGACAAGATCACCCTTCATGGCAACCCCTGACAGAGTGAATTCGTTCTTCCAAGTAGGCCCAACCTCCTACCATCTCACTCAGTGTGGGCTCACCAACAGGGTAGCATGCTCATGATAGAATCCCATGGTTCCTCCAGCTTGGGACCAAGGCTTTTAACTCGTGAGCCTTTTTGAGGAACACTTTACAGCCTAACTACATTAGATGTATATAAAAGACTGTCTTGTTTTCGACAGATATAAAGTCAGTATCTTAGATGTAATACACAAGACACATGGTAATAAAGTGTGCATTATAAATTCTCGACTAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAATAAATTCTCGACTAAGAAAACACAAAGCACTAAGAAAACATTGCATGTAACACAATCTACTTCCATTGTTTGATTTATCAACACATAAGCATAGATATAGAACTGTATTTTGCAGGCATATATTTTGTCTTACATGTGTTTGAGTTAGAGAAAACAATAATTGCTGCTGTCCTGGAGAACTGTACATTTTAATGCAATAATATGCAAAAAGTATGGTATGCATCTTTGAAAAATCTGATGAGCTCGCAGGAAGAAAGTCTAGCACATTTACAAATGAGATTGGTTTCAAGTTCAGTAGTATTTACTATAGCATTTTTTTTTCTGTAATGTGTCAACAGAGTTTAGCATTCTATTTATTTATTTATTTAATTTATTTATTTTTGCTTGTAAGTTTTCTTACAACCAAATTATTCTATGATTTCTTCATGAGCATAGCCATCTATGGATCTGCTTGAAGACCCTAAATGATTTGGAAGAGTTTAGGTTGTTGGAAGTACTCTAAAACATATTTGGTCACTATCAAGAACTTTATTTTATCTAAGTTGCTTTTGGAAATATTTTATTTAGAACTGTATGATTTCTTGGAAATCATTTTTGAGACTGTTTATGAGCTTTGAGGTATAGTCAGATCAGGTAGGGAAACAGTGTGGTGCTTTGAAGCAACCATTGATTGCTTGCAAAATCTTTAGGCTTAGACTGAAACACTGCTGAAAGAAATCTTAACAAAATTGTAGTGAGTTTTGGAATACTGTACTCTTTCTTCCAAAACATAAGAAGCGGAGGGAATTCTCCCATGTAGGGGTTGAGAGGGAGAAAGCAAGCTGAAAAGCCAGCTTTGTACCATGCCACTATGTCATTGACTCTGATTGGACTCCTCTTGTGCATATCCCCAGTGCAAATAGAGAAAGGGGGATGGAGATTTTTGTGTGTGACTGGCTGCAGGACAGTACTCATGGGAAAAAATTAGGTGATCAAGGAACCTATGTACAAAGGTTCTAATGTGGAATGATGAAGACACCCTGAGACCAAGGTCGGATCCAAACCCCAACAGTCTAATCTCAAAAGTGCCATCTAGTTCTGTAAGAGATTAGATTTGTAACACACAATCACTTGACGGTATTTGTCTTTTTGATCTAGTGTTAATACACACTCCTATGTATATAGCTAAAACACCAGCTTCATGCCATGGCAAACAAAAAAGGATCCATTACAAGTGATTCAAATTTAGAACAGACTCCTTAAAAAGAATGGTCAGATAATGTATTCCAAACAAGTTTCCTAGCTTCAAAATAAACATTGTCTCAGACAGGAAAGAAAACAAATGGCCACATTCATGCTGTGTTTGGATCAATTGATTATGGTGGAAAATACTGCTGGCTTCACTCAAGCTTTTATCTTTGAAGTGTGTACAGTCTTTAAACGTTAGCACTGTATGTCTGAATATTAGAGGAGAGAAAAATTTGTTTTGGTCAAACGGAAGTTTTGTTTTGTATAAGATCAGAACAAAGCTGGAGTTAAGTCTGGCTCTCCTCCAGTCAGGCTCACCGTAAATTTCTGTCCTAGTAACTGGCTTTCACTCAGGGGAAAGGGGGAAGAATTCCATGTTCTATGCTGTTGTCGACCTAGTTATCTTGGATGAGACTCTCAGACTCATGAGCACCTCAGAAGCCTCGCTTTCTCTGCTTTGGTTGCTGCAG
Seq C2 exon
TGTGATGGGACAGACCTCACCCCAAAGATCCAGGACCTGAAGTTCCAGTGTATAGTATTTTTAAATATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665:ENSMUST00000101532:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types