RnoINT0047018 @ rn6
Intron Retention
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64548412-64550976:-
Coord C1 exon
chr4:64550914-64550976
Coord A exon
chr4:64548486-64550913
Coord C2 exon
chr4:64548412-64548485
Length
2428 bp
Sequences
Splice sites
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
3' ss Seq
CTCTGCTTTGGTTGCTGCAGTGT
3' ss Score
6.58
Exon sequences
Seq C1 exon
GCAGCCTTTTCTGATTTCCTACAGAGAAGTTCTAGAGATCTATCCAAGCACGTCAAAGTTGTT
Seq A exon
GTGAGTATTGACTGTCCAGGTTCATTTCATTTGCATGTGAATGAGTGTCACACACACACACACANCNNTAGGTCACAATGGAATCATCATCATGACCTGGCCCACCACCTTACACATATATTCTCATTCCAGCAGTTGATCTCCACAATGGATAGCTTCCAGCAACAGTAATGAGTCTGCAACACATCGGTCCACTCGAAGGAACAGCAGAGGACACATGAGCCTTTTTTGAGGACACTTCATAGCCTAATAAATTAGAATCCAGGTTTTTTGTCACAGATAAATACAGTATCGTTTAAATACCAAGACACATAACGGTTAATGTATGAATTCTAGGATCGAAGATACACACCAGCACTAAGAAACACTGCCATGATAGTCATAATCACTCTCCATTTGTTTTTCGATTTACTTAAATAAGCATAGATAACTAGAACTGTGTAATGTTTTGATCTTAGGTTTCTGAATTAGAGAAAACGGATGTCGCGTTGCTGTCTGTACTCAGTTTTAATGCAATAAATAAAAATAGTGTGGATACATCCTTTGAAAAAGTATTGAGAGCTCCCTGGAAGAAAGTCTAGCACATTAAAAATGATACGGTCCGGGACCAACAACAGTTGAAGTGAATCAGAGAAAGAAACTCGAAGAGTTGAGGAGCTCGAGACCCTTATGAACAACAATGCCAGAGCTAAACCAGAGCCTTCCAGGGACTAAAGCACTACCCCTAAAGACTATACATCGGCTGACCTGGACTCTGACCTCATAGGTAGCAATGATATTCTAGTAAGAGCACCAGTGGAAGGGGGAAGCCCTTGGTCCTGCTAAGACTGAACCCCGTGAACGTGATTGTTGGGGGAGGGTGGCAATGGGGAGATGGGAGGGGAACACCCATAAAGAAGGGAGGGGGAGGTTAGGGGGATGTTTGCCCGAAACTGGGAAAGGGAATAACACTCGAAATGTAAATAAGAAATACTCCAGTTAATAAAAAAAAAAAAAAAAAGAGTTCGGTTCCAAGTTCAATAGTATTTACTATACTATTTTTTCTGTAATGTATTCCACAGAGTTTAGCATCCTATTGTTTGGTTGTAAGTTTCTTACAACCAAATTACTCTATGATTTCTTCATGGGCATTAGTCATCTATGAATCTGTTTGAAGCCCTTAAACCATATGAAAGATTTAGGTTGTTGGAAGTACTCTAAAATATTTCGGTCACTATCTAGAACTTTATTTTCTATCTAAGTTACTTTTGGAATACTTATTGAGAACCTTATGATTTCTGGAATCGTTTTGAGACCTTTAATACACTAGGGTGTAGTCAGACCAGGTGGAAAAGAGTGTGTTGCTTTGAAGCAACCATTGACTGCTTACAAAATCATTATGCCTAGACTGAAACACTGCTGAAAGGATCTTCACAAATTGTAGCACGTTTTGGAATACTGTGCTTCTCTTTCGAAAGAGAAGAGCTGATGGAATTCTGGGATGTGGAGGTTGAATGGGGAAAAGCAAACTGCAAGCAGCTGTGCTACCGTGTCGTTGACCCTGATTAGATCCCTCTGGTGCATATCAACAGTGGAGATAAAGAAAGGGGGGATTGAGACTTTTTTGGTGTGATTGGCTGCAGGACAGTACTCATGGGGAAAAAATAGGTGGCGAAGGAACCTATGTAGAAGGGCACTAAGGCAGAAAGATCAGTGGGCCCTGAGACCAAGGTCAGAGCCAAACCCCAACAGTCTAAGCTCAAAAGTGCCTTCCAGTTCTGTAAGAGATTAGATTTGCAACACACAGTCACTTGACAGTATTTCGTCTTCTTGATCTAGTGTTAATTTGCATTCACATGTATGTGGGAGCTTACGAACTATTACATCTAAAATACTGGCTTCATCCTGCGGCAAACAAAAGAGGATCCATTACAAGTTCTTCAAATTTAGAACAGACTCCTTAAAAACATTCAGACAATGTATTCAAAACAAGTTTTCTAGCTTCAAAATAAACACTGTCTCAGACAGCAAAGAAAACAAGTGGGCACCTTCATGCCCTGTTTGGATCAATTGATTACAGTGGGGAATGCTTCTGGGTTCACTCAAGACTTCATCCTTGAAGTATGTGTAGTCTTTAAATGTTAGCACTGTGTGTCTAGATATCAAATCGTTCAAGTCGATGAGTGACAGTATCTGCCCTGAATATTAGAACAGAGGAAATTTGTTTTGGTCAACAGAAAGTTTTACTTTATAACAAAACTGAAGTTGAGCGTTGGCTCTTCTCCAGTTAGGTTCGCCATAAATTTCTGTCCTAGTAACTGGCATTCACTCAGGGGCAAGGGGAAAGAATTCTATGTTCTATGCTGTTGTCGACCTAGTTATCTTGGATGAGACTCTCAGACTCATGACTACTTCAGAAGCCTCGCTTTCTCTGCTTTGGTTGCTGCAG
Seq C2 exon
TGTGATGGGACAGACCTCACTCCAAAGATCCAGGACCTGAAGTTCCAGTGTATAGTATTTTTAAATATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705:ENSRNOT00000033268:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(12.7=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]