BtaINT0048646 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:102144590-102145128:-
Coord C1 exon
chr4:102145054-102145128
Coord A exon
chr4:102144647-102145053
Coord C2 exon
chr4:102144590-102144646
Length
407 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTTTTCTTTTTAAATGACAGATT
3' ss Score
7.99
Exon sequences
Seq C1 exon
AAATCAGCTCTCAGGAGGAAGTGTGCAGTCTGTAAGATTGTCGTCCATACCGCCTGCATTGAACAGCTAGAAAAG
Seq A exon
GTGAGACAGCGCCACCTGCTGCAATCTTTGCTACCCTGCAAGTGTTTGGACTTCAGAGACAAAGCGTCAGTTCTCATTTTCAACTTCTTGACAACTACGCTCTTTTAAAAACCTAGAAGTCCAACGTTAGCACCAGATTAATAATGGGAGGACTATGCTTAAGGTTTACATCCACTCTATTGTTTACTGAGCTTTAATTTGATATCATTTCATGTTGACTCTTGGGTAAAGGAATAAAAAGGTTAGAGAGAAAAGCCTGGTATGGGCCTATTTCTTCACAATAACAGCAAGTGTTGTCATTCGCCCATGGGATTTGTTGGTTTTTTAGGGTAACTCTAGGTAATTTTTAGGGTAATTCTAGTTAGGTGCTCTCCCTAATATAATACACTTTTCTTTTTAAATGACAG
Seq C2 exon
ATTAATTTCAGATGTAAACCAACATTTCGAGAAGGAGGTTCAAGATCACCAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980:ENSBTAT00000026616:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(42.9=100)
A:
NA
C2:
PF0013017=C1_1=PD(8.9=26.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]