MmuINT0048848 @ mm9
Intron Retention
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:37046248-37047626:-
Coord C1 exon
chr6:37047552-37047626
Coord A exon
chr6:37046305-37047551
Coord C2 exon
chr6:37046248-37046304
Length
1247 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTTTTCTCTTCAAATGGCAGATT
3' ss Score
8.08
Exon sequences
Seq C1 exon
AAATCCGCTCTCAGGAGGAAGTGTGCCGTCTGCAAAATCGTGGTCCACACAGCCTGCATTGAGCAACTAGAGAAG
Seq A exon
GTAAGCGAGCGCCACCTGCTGGCGAGTGTGTTGGCTTCGGTCACTTACCAAGATCTGGTGTCAATGTCTAACTTTTTAAAAAACAAAACCAAAAATTGTTGAGTTCAGGATGACTTACCAGAATAACAATGAAAAGACAATATATAAAGGTCAGCCATGGTCTTGTTTTCCTGGGTTTAATTTGATATTATGTTGCATTGAACTTTGGGAAAGCTTGGCAACACTTACAATAAGCCTTTTAAGATTGTAGCTTCCATATGTTTCTCTCGGTGAGTTCACATATTCCTAAAGGAGCTCGAAGGGAGAGTTAGCCAAGCCAGCCGAAAGCAGCTCCCAGATGCTGCTGCAGACCTCACGGGCAGCAGTTTTTGCTGGTGCAGCATGAAATGTGTGGCTAAGCCAGGAGTGGCATCCCAAGGGTGGTGTCTTGTCTCCAGAAGTGGATTCTGAACTGTCTATTCATTTACCATCTGGGGGGAAGGGCAGAGCTCTGCGAGAGAGCTGCTTGCTGCTCTCATTTATAATTCCTCCTCCGTGTCCAGGCGAGACACTGAGTGGGATCTATATTCGTGCGCTGCCCTTGGCAATCACGGTGGGACTATTTTAGCTTTGTACAATGTTTGCTTAGCTTCGCCAGCACCTCCAGCTGCTGTCAACCTATATCTCACAGCCATGCCTAACACTTGGACTAGATTTTTCTCGTCTGCACTCTACTTCACTTTATACAGGAGCAAAAGAGCTCACGAGGACACTTCTCATCCACAGAGCAAGGCAGTGCTGAGTCCTTTTACAGGGAATATCTGTGCGTGTGTTTGAATGGTTATCACAGCAGTTAGGACTTCTCAGGTTTATATTTTCTACTTTAAAAAAAAAAGCAAAAAAAAAAAAAAAAAAAACCCAACTTACCCGGATGACTTCAGCTGCCATGTACTTTACCTGTGACTTTGGTCTCCATTTTTCCAGATTCATGGGCTAAGAACGTTTTTGTTTGTTTGTTTGAAGTTAGACTGCATGGATGAGAATGCAGGACTGCCGACTGGAGGTGTGAAATGGCACTGTACCTCTGTGGATCGTCTAGTGAGATGCTTCGGGAGAGTAGGAGCAGGCTAGAACGGATTCCTTATTCTTCCTGGGCTTGGTTTATAGCCTTCATGTCTACCACTATTGGTTGCTTTCTGGTCTCAGGTAGCTCTCTTCAACCTGTTGCTCGTCACTAACATTAACATACTTTTCTCTTCAAATGGCAG
Seq C2 exon
ATTAATTTCAGATGTAAACCAACATTTCGGGAAGGAGGCTCCAGATCGCCAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-Dgki:NM_001081206:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(42.9=100)
A:
NA
C2:
PF0013017=C1_1=PD(8.9=26.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: