GgaINT0108933 @ galGal4
Intron Retention
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57677590-57680361:+
Coord C1 exon
chr1:57677590-57677664
Coord A exon
chr1:57677665-57680304
Coord C2 exon
chr1:57680305-57680361
Length
2640 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CAGCTTTATTTTAATGCCAGATT
3' ss Score
3.85
Exon sequences
Seq C1 exon
AAATCTGCTCTGAGGAGGAAGTGTGCTGCCTGCAAGATTGTGGTCCACAACGCATGCATGGAGCAGTTAGAGAAG
Seq A exon
GTAAGATATTGCCATCTTCTGGAGACTGATGGGCACAACATTGATCTATTTAATTCTCAAGCTGAGCTTTGAGTCTGAAAAATACCATATGCCAAATTAGGTTTTCGTAGCTGTTTTGACAATATATTTGTTAAAATGATGTCTAAAATTTTCAGCTTATCTATTAAAATAGATTTCTTGAAACTCTGTGAACCATTAGGAGAAACAAACAAACAAACATCAAAACACCATGGAATGCTTTCACAATTTTAATGATCAAAAAATGATTTCCCTCTGCTTCTAGGCTGGAAATTGAAGCTAGAAAATGCAGTATCCTGTCATGCACAAAATTGGCCTTTCAAAATTCCTCAGCGAAGCCCAGAATAATTCATCTTATGACAGCTATAGGTATTATGAGCAATGCAGCATAAAATGCTACTGTGAATATTTTCCACTGTATTTACTAGACAATTTTATTTTTTTCCTCAAAACCTCAGAAACAAAGTTACTTTTTGAAATAGAAAGCATCAAACTTTTCCTTTATGGTGCCATTATTTCTATGAGCATCTGTCCTGTTTGTCACTTCAAGGAAACCTCTTTGCCTCCAAGTGCCTACAGAACACTGATCACAGAGTTCAGTTATCCCATCAGTGATTCTTACTCATTGCACCTAACTAACTGGTAATGTGTAAAAGGGATCCTCCACCTCTGCTTTTTCGTTCTTGGTGGGATATGTGTAAAGAAACGAGTGGGAATATCCCCACTGACTTCATTAGAGCTTCATTTTCACTCCTATATGTTTTGCAATGTTGTTCTCCATAAAATAAGTTGATGCAAACAAATTTATAACAGCAACCCTTTGGAAAGAGTTTTTCGTTTCCAACTATTTGGGCTTGTGTTGACAAATGTCACAGTGATTGCCATAATACCAAGTTGGAGAGGTACCATTTCCACCCCCGATGCTTTTACCCGCAGTGAAATTAGCATTAGCACATGCTTTCAGCTCAAACTGTTACCAGTGAATTTTTCATGAGTTCTTTCATCAGCAGCATTGCTGGCTCTCCACAGCCCAGTATGCTGGTGGCATTGCCAGTGGTAGCACTTAGATAAAACCCTTTCTGTTGAACTTGTTTATGCCATTCTAGAGAACATGAAATTTACATCTTGGCAGAGGGTTATTATGAAGTCCACATGCATCTTAAGCCTGGTGGGGCTTAAAAGTGGTACGTAAGTCTTCTGTTTGGCCTCCACATAGGTGTAAGTTGTAAGTAAACTAAATATAAGCTGGAAATCTCTCCAACTTCTCAGGACTCAGAAGTGGAATGATGAATTGCAATTCCACATGAAGAGTAGTGGAAGAAGATAATGCTATGGTTTTTATTTCTTTTTAAGTAATAAATATTTCATTCACTTTTTTTCTTTTTCTCACTTGAACTATTATTTTGAAGGCCATGATTAGATGAGGTAAAAACCCTCATTCTATAGGAAGTAAAGAATTGTATTCAAAATTGGGGAAACTTGATCCTTCTATTTTCATAACAAAAGCATTACAATGCAATATCCTTAAGGGTTTTACTCTTTGAAGGGTGGTCAATTCAAGTTTGAATTCATTTCATTTAGTGCATTCCGTTTATCCCTTAACCTTTTCCTTTGACTCGCCATTCTTCAATATACCATTTTCTCTCTTAATATATTCACTTGCTCATATTTCTATTGATTTTACTCAGAAGATCATAGAATCATGGAATGATTTGGGTTGGAACGGATCTTACAGTTCATCTAATTCCCATCCCTGACATCTTTCATTATATAAGGCTGCCCAAAGCTCTGTCTAACTTGACCTTGAACATTTCCACAGATGGGGAATTGTCAGCTTCTTTGTGCTAGTTTCTTCAGTGTCTCACAACACATAGTAAAGAATTTCTTCCTAAAGTCTAATCTAAATCTGCCTTCTTTGTTTTAAAAATCATTACCCCTTGTCCTGTCACTACAGGCCCTAGTAAAATATTTTGGGTTTTCTCATCAGACTCTCATATGTTCTTTATTGCTTTTTCTCTTCAACTTTCTAAAAAGATGTTCTCTTCATGGAAGCTCCTGTTGTCCTCTTTCTGCCTTTCCTCTTCCATCTGAAGGAGGCAATACCACTGCATGAGGCAGTCTTATGCTCCCCAAGCAGCCTGATGTAAGGAAAAGGTAGAAATTTATGATAATTTATGTTTTTTTTCTGAGAACAAAGATAATTTTTCCACAGATTTTGTTCATGAAGGCATAAAGCTGAGTTGTGAGAAAGATTTTAGGATTGGATTTCCAGCTCCTATTAACTTTTGATGACTCAGCTTAAGTCTACTCTCATTACAAAGTATATTCTTAAGAAAAAAAAAACAGATGAAGCAGTTTCCTCCTTGGCATGATGGAGATGGTTTAAATAGTTGAACTGAGCATGCAGCAGTAGCTTTAGTGATGATGAGGGTTGTGTAGAGATCTAGGAAAGAGCATTGATATGGCATGTGAAGAGATTTTCTGTCATCCAGGTAAGTCTGTTCAACTAGTGAAATAAATATTCTAATGGGTGATATATACTTTGGAAGTGTGCCCTAGATCAACATATTGGAATAAACTCTCAGCTCATTTTCAGTTCTAACAGCTTTATTTTAATGCCAG
Seq C2 exon
ATTAATTTTCGCTGCAAACCAACTTTCCGAGAAGGGAGCTCCAGGTCTCCAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890:ENSGALT00000021020:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(42.9=100)
A:
NA
C2:
PF0013017=C1_1=PD(8.9=26.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]