GgaINT0108933 @ galGal3
Intron Retention
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59604042-59606813:+
Coord C1 exon
chr1:59604042-59604116
Coord A exon
chr1:59604117-59606756
Coord C2 exon
chr1:59606757-59606813
Length
2640 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CAGCTTTATTTTAATGCCAGATT
3' ss Score
3.85
Exon sequences
Seq C1 exon
AAATCTGCTCTGAGGAGGAAGTGTGCTGCCTGCAAGATTGTGGTCCACAACGCATGCATGGAGCAGTTAGAGAAG
Seq A exon
GTAAGATATTGCCATCTTCTGGAGACTGATGGGCACAACATTGATCTATTTAATTCTCAAGCTGAGCTTTGAGTCTGAAAAATACCATATGCCAAATTAGGTTTTCGTAGCTGTTTTGACAATATATTTGTTAAAATGATGTCTAAAATTTTCAGCTTATCTATTAAAATAGATTTCTTGAAACTCTGTGAACCATTAGGAGAAACAAACAAACAAACATCAAAACACCATGGAATGCTTTCACAATTTTAATGATCAAAAAATGATTTCCCTCTGCTTCTAGGCTGGAAATTGAAGCTAGAAAATGCAGTATCCTGTCATGCACAAAATTGGCCTTTCAAAATTCCTCAGCGAAGCCCAGAATAATTCATCTTATGACAGCTATAGGTATTATGAGCAATGCAGCATAAAATGCTACTGTGAATATTTTCCACTGTATTTACTAGACAATTTTATTTTTTTCCTCAAAACCTCAGAAACAAAGTTACTTTTTGAAATAGAAAGCATCAAACTTTTCCTTTATGGTGCCATTATTTCTATGAGCATCTGTCCTGTTTGTCACTTCAAGGAAACCTCTTTGCCTCCAAGTGCCTACAGAACACTGATCACAGAGTTCAGTTATCCCATCAGTGATTCTTACTCATTGCACCTAACTAACTGGTAATGTGTAAAAGGGATCCTCCACCTCTGCTTTTTCGTTCTTGGTGGGATATGTGTAAAGAAACGAGTGGGAATATCCCCACTGACTTCATTAGAGCTTCATTTTCACTCCTATATGTTTTGCAATGTTGTTCTCCATAAAATAAGTTGATGCAAACAAATTTATAACAGCAACCCTTTGGAAAGAGTTTTTCGTTTCCAACTATTTGGGCTTGTGTTGACAAATGTCACAGTGATTGCCATAATACCAAGTTGGAGAGGTACCATTTCCACCCCCGATGCTTTTACCCGCAGTGAAATTAGCATTAGCACATGCTTTCAGCTCAAACTGTTACCAGTGAATTTTTCATGAGTTCTTTCATCAGCAGCATTGCTGGCTCTCCACAGCCCAGTATGCTGGTGGCATTGCCAGTGGTAGCACTTAGATAAAACCCTTTCTGTTGAACTTGTTTATGCCATTCTAGAGAACATGAAATTTACATCTTGGCAGAGGGTTATTATGAAGTCCACATGCATCTTAAGCCTGGTGGGGCTTAAAAGTGGTACGTAAGTCTTCTGTTTGGCCTCCACATAGGTGTAAGTTGTAAGTAAACTAAATATAAGCTGGAAATCTCTCCAACTTCTCAGGACTCAGAAGTGGAATGATGAATTGCAATTCCACATGAAGAGTAGTGGAAGAAGATAATGCTATGGTTTTTATTTCTTTTTAAGTAATAAATATTTCATTCACTTTTTTTCTTTTTCTCACTTGAACTATTATTTTGAAGGCCATGATTAGATGAGGTAAAAACCCTCATTCTATAGGAAGTAAAGAATTGTATTCAAAATTGGGGAAACTTGATCCTTCTATTTTCATAACAAAAGCATTACAATGCAATATCCTTAAGGGTTTTACTCTTTGAAGGGTGGTCAATTCAAGTTTGAATTCATTTCATTTAGTGCATTCCGTTTATCCCTTAACCTTTTCCTTTGACTCGCCATTCTTCAATATACCATTTTCTCTCTTAATATATTCACTTGCTCATATTTCTATTGATTTTACTCAGAAGATCATAGAATCATGGAATGATTTGGGTTGGAACGGATCTTACAGTTCATCTAATTCCCATCCCTGACATCTTTCATTATATAAGGCTGCCCAAAGCTCTGTCTAACTTGACCTTGAACATTTCCACAGATGGGGAATTGTCAGCTTCTTTGTGCTAGTTTCTTCAGTGTCTCACAACACATAGTAAAGAATTTCTTCCTAAAGTCTAATCTAAATCTGCCTTCTTTGTTTTAAAAATCATTACCCCTTGTCCTGTCACTACAGGCCCTAGTAAAATATTTTGGGTTTTCTCATCAGACTCTCATATGTTCTTTATTGCTTTTTCTCTTCAACTTTCTAAAAAGATGTTCTCTTCATGGAAGCTCCTGTTGTCCTCTTTCTGCCTTTCCTCTTCCATCTGAAGGAGGCAATACCACTGCATGAGGCAGTCTTATGCTCCCCAAGCAGCCTGATGTAAGGAAAAGGTAGAAATTTATGATAATTTATGTTTTTTTTCTGAGAACAAAGATAATTTTTCCACAGATTTTGTTCATGAAGGCATAAAGCTGAGTTGTGAGAAAGATTTTAGGATTGGATTTCCAGCTCCTATTAACTTTTGATGACTCAGCTTAAGTCTACTCTCATTACAAAGTATATTCTTAAGAAAAAAAAAACAGATGAAGCAGTTTCCTCCTTGGCATGATGGAGATGGTTTAAATAGTTGAACTGAGCATGCAGCAGTAGCTTTAGTGATGATGAGGGTTGTGTAGAGATCTAGGAAAGAGCATTGATATGGCATGTGAAGAGATTTTCTGTCATCCAGGTAAGTCTGTTCAACTAGTGAAATAAATATTCTAATGGGTGATATATACTTTGGAAGTGTGCCCTAGATCAACATATTGGAATAAACTCTCAGCTCATTTTCAGTTCTAACAGCTTTATTTTAATGCCAG
Seq C2 exon
ATTAATTTTCGCTGCAAACCAACTTTCCGAGAAGGGAGCTCCAGGTCTCCAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890:ENSGALT00000021020:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(42.9=100)
A:
NA
C2:
PF0013017=C1_1=PD(8.9=26.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]