RnoINT0047036 @ rn6
Intron Retention
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64628101-64629477:-
Coord C1 exon
chr4:64629403-64629477
Coord A exon
chr4:64628158-64629402
Coord C2 exon
chr4:64628101-64628157
Length
1245 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTTTCTTTTCAAATGGCAGATT
3' ss Score
7.93
Exon sequences
Seq C1 exon
AAATCCGCTCTCAGGAGGAAGTGTGCTGTCTGCAAAATTGTGGTCCACACCGCCTGCATTGAGCAACTAGAGAAG
Seq A exon
GTAAGAGATCGCCACCTGCTGACGACTGTGTTCACATCAGTGACTTGCCGAGATCTGGTGTCAATTTCTAACTTTCTTCAAAACAAAAACAAAAATTGTGGGTTCAGTATGGCTATCAGAATAACAATGGAGAGACAATACATGAAGGTCATTCTTTTCCTCAGTTTAATTTGATACTATGTTGTGTTGAACTTTGGGAAAGGTTGTCATGCACCAACTCTTCCACAAGATGTTTCCTCTAAAGCAGAGGAAACGAAAAGATTGCAATAAGCTTTTTAAGATCATAGCTTCCATATGTTCCTGTGCGTTCACACCTTCCTAAAGTAGTTCTAAGGGAGGGCTCGCCAAGCCAGCTGAAAGCAGCTCCCAGCCTCTGCTGCAGACCGCACAGGCAGTGATTTTGCCTGCACAGCACGAAGTGTGTGGCTGAGCTGGGAGTGGCATCCCAAGGGTGGTGTCTTGTCTCCAGAAGTGGATTCTGAATAGTCTCTTCATTTACCATCTGGGGGAAGGGAAGAGCTCTGATAGTTGCTTGATGCTCTCATTTATAATTCTCACTCTGTGTCCAGGCGAGACTCTTCATGGTGTCTGTATTCTTGTTCTGCCCTTGGCAATCACAGTGGGACTGTTTTAGCTTGGTACAATATTTGCTTAGCTCCACCAGCACCTCCAGCCCTGCTGTCAACGTATATCTCACAGCCATGCCTAACACTCGGAATATGTTTTTTCTCGTCTCCATTCTATTTCACTTCATACAGGAACAAAAGAGGCCACGAGGACACCTCCCATCCACAAAGCAAGGCAGTGCTGAGTCCTTTTGCAGGGAATATCTGTGCATGTGTTTGAATGGTTATCACACAGTTAGAATTTCTCAGGTTTATGCTTTCTACTAAAACAAAACAAAACAAAACAACAACAACAAAAACAACTCTCCCTAATAGGTTCATTTTTCAGATTCAAGGGCTACGGATGTTTTTATTTAAAGTTAGATTTCCCTGATGAGAATGCAGGCATGCAGGGTGGAAGGTGTGAAATTGCTTGCCACCTCTGCCAATCATCTAGTGAGATGCTTTGGGAGAGTAGGAGTACGCTAGAACAGACTCCTTATTCTCCGTAGGCGTGGTTTTATAGCTTTGATGTCTACCGCTATTGGTTGTTTTTTTTTTTTTTAGGGGGGGTCTCAGGTAGTTCTATTCAACCTGATGCACATCACTAACATAACATATTTTTCTTTTCAAATGGCAG
Seq C2 exon
ATTAATTTCAGATGTAAACCTACATTTCGGGAAGGAGGCTCCAGATCGCCAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705:ENSRNOT00000033268:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(42.9=100)
A:
NA
C2:
PF0013017=C1_1=PD(8.9=26.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]