BtaINT0048653 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:102103552-102104240:-
Coord C1 exon
chr4:102104166-102104240
Coord A exon
chr4:102103651-102104165
Coord C2 exon
chr4:102103552-102103650
Length
515 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
GTGCTGCTTTCTTTCTTTAGCAG
3' ss Score
8.4
Exon sequences
Seq C1 exon
AACTCCCTGAAGGCATCCAATCGGAAAAAGAAGAGAACAAGCTTTAAAAGGAAAGCCAGCAAAAGAGGAACCGAA
Seq A exon
GTAAGTGCTTGAGGGTGATGGTCCAGGGAAATCCACCTTCCTCTCCACCGTCTCCTCCGTCTGACTTGACCTGGCCCGAGCTCCTTTTTCTGATGTGTCTCCTGCCACTCTCCTTCACCATACCCTGACCACACTGGGATTCTGCCGGTTCCTTTAAAATATACACATAAAACCTCTTGCCACTTGAGAATCAAAGTATTTGCTCTTGTCTGTGGAAGTATGGTCACAAAGATGATAAAGATGAAGATGAGAGCTAGAATGTATCTAGAACACTTCAAGCCTATAGGAAAAGAAAAGATCATGGCTAAATTCTTGGGGGCAAGTTATAGTTTGAGACACTTTCTCATGTTGAGTAAGCCCTGTGAAACAAGATGTAGTGTATTTGGGGGGATATGTTGATTTGGGGGATGGGGTGGGGAGTGGCAGTGGTTCTAGAACTACCTCACTTGCATTGCTTTGGGGCTGCTTTTCAAGTCGTGGATGTATGTCTCAATAGTGCTGCTTTCTTTCTTTAG
Seq C2 exon
CAGGAAAACAAAGGTCGTCCTTTTGTGATAAAACCTATCTCTTCTCCGCTCATGAAACCTTTGCTTGTGTTCGTGAACCCCAAGAGTGGAGGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980:ENSBTAT00000026616:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.880 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=39.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]