RnoINT0047041 @ rn6
Intron Retention
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64586794-64587488:-
Coord C1 exon
chr4:64587414-64587488
Coord A exon
chr4:64586893-64587413
Coord C2 exon
chr4:64586794-64586892
Length
521 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ATGCTGCCTGCCTCCTCCAGCAG
3' ss Score
7.14
Exon sequences
Seq C1 exon
AACTCCCTGAAGGCTTCCAACCGGAAGAAGAAAAGAACAAGTTTTAAAAGGAAAGCCAGTAAAAGAGGAACCGAG
Seq A exon
GTAAGTCTTTCCGGGAGATGTGTCAGGCACACAGCTTTCTCTGTAGAGGCTACTTAACCCGAGGATCTGGCCCACACTTAATTTTGTGGTGTGCCTTGTGGATATTTCTTTTCCCTTCAGCTATTCAAAGCATGTTGGAATCCTTCATGTTCCCAATCAGTTCAGCTGTCCATCGATTCGTCAGGTCTTACCTGCCACGCCAGAGGCAGAGCACCTGCCCTTGCTTGGAATGTCTCCCCCCCCCCCCAAACGATGCTGATGATAGAGATGACATCAAGAACCAACCCTCCTAGAGCCCTTAGAGCATGCAGAGGGAAATCCAAGGCATAGCTCAGCCTGCTGGGTAAATTAGAGTGGGAGGAGCTCAGTTCCAGGACATGTGCACACACTGCTATGAAGACTCAGTCTTTTGGAATAAGACTGGGGATCTTAGGGGTGCACAGTGTTCTCTCTCCCCATTGCTTTGTGATTATAACCACGCCATGGGTGTTTATCCTAATGATGCTGCCTGCCTCCTCCAG
Seq C2 exon
CAGGAAAACAAAGGTCGTCCTTTTGTGATCAAGCCCATCTCCTCTCCTCTCATGAAGCCTTTGCTTGTCTTTGTGAACCCAAAGAGTGGGGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705:ENSRNOT00000033268:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=39.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]