DreINT0008941 @ danRer10
Intron Retention
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4637907-4638247:-
Coord C1 exon
chr4:4638173-4638247
Coord A exon
chr4:4638003-4638172
Coord C2 exon
chr4:4637907-4638002
Length
170 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TAATGAAGTGACTTGTGCAGGAA
3' ss Score
2.06
Exon sequences
Seq C1 exon
AGCTCATTTAAAAACTCCACTCGGAGGAAAAAACGGACGTCGTTCAAAAGAAGAGCCAGCAAAAAGGGCACGGAT
Seq A exon
GTGAGTAAATCTGATTCCTGTGCTTTTCCCAGGTTTTCTGAGGGCCTTTTCTTCCCTTAACTCCTGCTCTGTGATCATCTGTCCCCACACAGCCTACTTCAGTGTGTGTATGTGTGTGTGTCGTTGTGCTAATGCGCATTCATTGAAGTATAATGAAGTGACTTGTGCAG
Seq C2 exon
GAATCTAAATGGCGTCCATTCATGCTGAAGCCGCTGCCGTCACCGCTGATGAAACCAGTGCTGGTGTTCGTCAACCCGAAAAGTGGAGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578:ENSDART00000093005:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCATTTAAAAACTCCACTCGGA
R:
TGGTTTCCTCCACTTTTCGGG
Band lengths:
170-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]