GgaINT0054688 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25820769-25821303:-
Coord C1 exon
chr5:25821232-25821303
Coord A exon
chr5:25820865-25821231
Coord C2 exon
chr5:25820769-25820864
Length
367 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ACCTGTGGTGTCTCTTGCAGGAA
3' ss Score
12.99
Exon sequences
Seq C1 exon
AATCCAATGAAATCCAGTAAGAAAAAGAAGAGGACATCATTCAAGCGAAAATCCAGCAAAAAGGGTGCTGAG
Seq A exon
GTAAGAGATGAGAGGGGATGGGGGTGACCTTGTGTTGGGAAGGTAGAGATGCTGGGCAGTGAGGAGCAGAACTGGGAAATAAGGGCACTTTTCAGGGTCTGCACTGAAGTGCGAGGTGGAGGAGAAGGGGGCTGGGGTAAAGGGGAGCCTTGGGTGTGGCTGAAGAACTCAGAGGTTGTCACAGAGATGAGAAAGGCTGGGAGGTGAGTTACGTCTGCTGGCAGGGCACATCCTAGCTATTAGCTTTATGGAGTGGTTGGGATATTCTCTTCCTTCCACTCCTGACCTACGTGATGTCAGGGCTCAGCTGGAGGTCGGAGTTAGCATTTCACTAGGTCTATTAATGGACCTGTGGTGTCTCTTGCAG
Seq C2 exon
GAAGGGAGGTGGAAACCTTTTGTCATCAAGCCCATGCCAGCTCCTCTCATGAAGCCCTTGCTCGTGTTTGTGAACCCCAAGAGTGGTGGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]