BtaINT0048728 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77241237-77241693:+
Coord C1 exon
chr15:77241237-77241308
Coord A exon
chr15:77241309-77241597
Coord C2 exon
chr15:77241598-77241693
Length
289 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
3' ss Seq
GGGCTCTCTCTGTCTCCAAGGAG
3' ss Score
5.02
Exon sequences
Seq C1 exon
AACACCCTCAAAGCCAGCAAGAAGAAAAAAAGAGCATCCTTCAAGAGGAAGTCTAGCAAGAAAGGGCCTGAG
Seq A exon
GTTAGACCGGGGACCAGGTGGGCAGCCGGAGGGGAACAGGAGAGGGGGGCCTGTTTCTTGGGGCACTGAGGCCCTCCCCGCCGCTGGAGCTGACGATGCGGCTGTCGCTGGGTCAATCTGGGCTCTGGAGCCCCCAAGCAGGGGGAGAGGTCCAGGTCCTCCTCTGGGGCCAGGCCCACTGTGAGGTCTGACCCTGCGGTGATACTCACGGGGGCACCTGGGGCACAGAGAACAGGGTGAGGGTCCCCCAGGGTGGGAACCAGCCTTACGGGCTCTCTCTGTCTCCAAG
Seq C2 exon
GAGGGCCGCTGGAGACCCTTCATCATCAGGCCTACCCCGTCCCCCCTCATGAAGCCCCTGCTGGTGTTCGTGAACCCCAAGAGTGGGGGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=NA C2=0.156
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTCAAAGCCAGCAAGAA
R:
CTGGTTGCCCCCACTCTTG
Band lengths:
166-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development