HsaINT1010988 @ hg38
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46371704-46372170:+
Coord C1 exon
chr11:46371704-46371775
Coord A exon
chr11:46371776-46372074
Coord C2 exon
chr11:46372075-46372170
Length
299 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
CCTCTCACCTTGTCTCCCAGGAG
3' ss Score
8.51
Exon sequences
Seq C1 exon
AATACTCTGAAAGCAAGCAAGAAGAAGAAGAGGGCATCCTTCAAGAGGAAGTCCAGCAAGAAAGGGCCTGAG
Seq A exon
GTCAGCCCCAGGCTGGGCAGAGGCTGCAGGGGAGCAGGAGAGAGGGGTCTGTTGCTCAGGGTACAGAACTTCCACCCCCAGCTAATGCTGCCAGCTGGTGGGGGTCTGTGTGGGCTCTGGGGCCTCTGAGGAAGGCAGGATTAGATGCCAGTTTCTGCTCTGTGGCCTGGTAAGATCTGGCCCAGAGATGGTACGTGAGGGTACAAAGAGGGAACAAAGTCACCCAGGGGGCCTGCTAAGGATGATGGTAGGGTGTCCTGGACGGGAAGGAGCTTACAGCCTCTCACCTTGTCTCCCAG
Seq C2 exon
GAGGGCCGCTGGAGACCCTTCATCATCAGGCCCACCCCCTCCCCGCTCATGAAGCCCCTGCTGGTGTTTGTGAACCCCAAGAGTGGGGGCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091:ENST00000343674:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.787 A=NA C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGAAAGCAAGCAAGAAGA
R:
CTGGTTGCCCCCACTCTTG
Band lengths:
165-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains