RnoINT0047120 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80851421-80851846:-
Coord C1 exon
chr3:80851775-80851846
Coord A exon
chr3:80851517-80851774
Coord C2 exon
chr3:80851421-80851516
Length
258 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
AACGGCTCTCTGTCTCCCAGGAA
3' ss Score
9.34
Exon sequences
Seq C1 exon
AACACCCTCAAGGCCAGCAAGAAGAAAAAGAGAGCATCCTTCAAAAGGAGATCCAGTAAGAAAGGACCTGAG
Seq A exon
GTAAGACCTGGGCTGGGGGGGTTGGGACCAGGAACTGGGGAGGAGAATCTCCGCTATCCAGGCCTTTGGACCATACTACTAGTTTATGCTGGCTCGGGTTGGGCTCCTGGTGTCTCAGGATGTGGGACATCAGCTTTCTTGTTCCCTGTGGAGAGGCCACGGAAGGTCTGATACATGAGGGTGTTCTCACTTGTGGCAGAGATGCTAGGAAGGGTAGGATAGGGCAGGAAAGCACATTAACGGCTCTCTGTCTCCCAG
Seq C2 exon
GAAGGCCGCTGGAGACCCTTCATCATCAGGCCCACCCCGTCCCCCCTCATGAAGCCCCTGCTAGTGTTTGTAAACCCCAAGAGTGGGGGTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=NA C2=0.156
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCAAGGCCAGCAAGAAG
R:
CTGGTTACCCCCACTCTTGG
Band lengths:
164-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]