GgaINT1011217 @ galGal4
Intron Retention
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57694289-57696001:+
Coord C1 exon
chr1:57694289-57694363
Coord A exon
chr1:57694364-57695905
Coord C2 exon
chr1:57695906-57696001
Length
1542 bp
Sequences
Splice sites
5' ss Seq
GATGTAGGT
5' ss Score
4.9
3' ss Seq
TTCTTGCTGTGGTTTCTCAGGAT
3' ss Score
8.81
Exon sequences
Seq C1 exon
AACTCATTAAAGACTTCAACACGGCGAAAGAAGAGGACATCTTTTAAAAGAAAAGCCAGCAAAAGAGGCAATGAT
Seq A exon
GTAGGTATTTAAGAGCTTTGAAAACCGGTTTCCTTTTGTTTGAATGTATAAATGCACATTTTAAAGTTCCTTTTACTGTGTTTTTGATATAATATATATATATATATATATATATTTTCTGGAAAACTCCATGTTACTGAAGTTGTTGCAAGAAAATATTAGTTTTGATAAAAACTTGTATGAAAAATCTCGTTTGCTGAGTTGATTTTTTTTTTTTTTCAAGAAGCAGCATACCAGCCTAATGAAACAATATTCCCCTGGGGTGTAAAAGACTCAGCTCAGACACTTGGTTTCAACTAGGCAGAGCAGGAGCGTGAAAGTGGGTTCTGAAATTCATGCTGAGCGTCTTGACTGCAAGAGTCTGAATATGGAGCTGGCTTGTATGTCTGCTTTGAGTGTCTCCCTTGGGAGATCTCCAGTTAGGGATATTTGGTCCTATGGTTAGGTTTACTATGTAGATTATAGAAGACTTTGTTTCCAGCCCTTGCCTACTGTATTTGTAGTATACTGAATGACAGCCTTAAGGGGAGAGTTGGATGGAGACTTACCTCTGCCCAGACAGAGATCTGTGGGTAAGATCTTCACTTGGGCAACTGCAGACCAGACACTTCAATCTGTGTCTGCCTCAGCCTAGGAGAGTGTCCTCATTGCTGGGCTCTCTAATGTAGTGCAGATACAGAGAAGTTGGGAGGCAGACATAATTGTCATTGACATAATGAAAATATCTAAGTTGCAGGAAACAAAGGGATGAGGCCAGACTCTTTTCAGCGGGTGCATAGCGATAGGACAAGGGGAAATGGCCACAAACTGAAACATAGGAAGTTCTGCTCAAATGTGCGTAAGAACTTCTTCACAGGAAGGGTGACGGAGCACTGGAACAGGCTGCCCAGAGAAGTTGTGGAGTCGTTTTCTCTGGAGACGTTCAAGACCTGCCTGGATGCCTACCTGTGCAACCTGGTCTAGGGAGCCTGCTTTGGCAGGGGGTTTGGACTAGATGATTTCTGATGGTCCTTTCTAGCCCCTACAATTCTGTGATTCTGTAATGAGAAATATTTGAATAACGTAATACAAGTAAAACCTGTTCAAAGAAGGGAGCGCCATCAAGGCCAAGAATACAGGAGCAGATAATCTGCAACTCTACACTGTTTCAATTTGCCTGTTAAATGGAAGCCAGGAAGTAAGTAGTTTATCTCACTCCATTTTCTACTGAAAAAAAATATATAATTCATATTAGAAATAGCACTATATCTGACACGTTGTTAGGACTGTATGAGTAATTTCTTTTTGGGAAAGAACACAAAGTAAAAAAAAAAAAAAAGTAATAGTGTTGGGCTGACCTGGAACAATTTTTTCCTTCTTATGGAATTTTCTTAGCTGCATAAATTTTATCTCAGCTGAGCATCATGTTACCATGGCTGTACTGTTTCCAATATCCAAGGTAGTTTTGTCAGAGCTATATTGGTTCTTCTACCTGCGTTATGCTAGTGAAATCTGCCCTTTTCATAACTTTTACTAAAGTTGTTTCTTGCTGTGGTTTCTCAG
Seq C2 exon
GATAACAAAGGTCGGCCATTCGTGATAAAGCCTATTTCCTCTCCACTCATGAAACCACTGTTGGTTTTTGTAAATCCAAAAAGTGGAGGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890:ENSGALT00000021020:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.117
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]