BtaINT0048707 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77242131-77242397:+
Coord C1 exon
chr15:77242131-77242191
Coord A exon
chr15:77242192-77242283
Coord C2 exon
chr15:77242284-77242397
Length
92 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GCTCTGCCCTGCTCCTCCAGGTC
3' ss Score
11.01
Exon sequences
Seq C1 exon
GCTGGAGATGTATCGCCGAGTGCACAACCTGCGGATCCTGGCCTGCGGGGGTGACGGCACG
Seq A exon
GTGAGTCCTCACGGCCTGAGAGGCTGGGCCGCCGGGGCGCCCGCACCGACCTGGCCCGCACCGACCTGGCCCGCTCTGCCCTGCTCCTCCAG
Seq C2 exon
GTCGGCTGGATCCTCTCCACGCTGGACCAGCTGCGCTTGAAGCCGCCGCCGCCAGTCGCCATCCTGCCCCTGGGCACTGGCAATGACTTGGCCCGCACCCTCAACTGGGGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
NA
C2:
PF0078119=DAGK_cat=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGTATCGCCGAGTGCA
R:
CCCAGTTGAGGGTGCGGG
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development