RnoINT0047094 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80850731-80850994:-
Coord C1 exon
chr3:80850934-80850994
Coord A exon
chr3:80850845-80850933
Coord C2 exon
chr3:80850731-80850844
Length
89 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TTTGTTCTGCCTTCCTCCAGGTT
3' ss Score
12.5
Exon sequences
Seq C1 exon
GCTGGAAATGTACCGCAAAGTCCATAATTTGAGGATTCTGGCTTGCGGGGGTGATGGCACG
Seq A exon
GTGAGTCCTGTGAGCCGGGCTCAGGCCTGACGCATCATCACTCCTCCTTCTCAGGCCTGCCTGACCCACTTTGTTCTGCCTTCCTCCAG
Seq C2 exon
GTTGGCTGGATTCTTTCCACCCTAGACCAGCTGCGCTTAAAACCACCACCTCCTGTGGCCATCCTGCCCCTGGGCACTGGCAATGACCTGGCCCGAACTCTCAACTGGGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
NA
C2:
PF0078119=DAGK_cat=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAATGTACCGCAAAGT
R:
CAGTTGAGAGTTCGGGCCAG
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]