DreINT0056537 @ danRer10
Intron Retention
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38818961-38819942:+
Coord C1 exon
chr7:38818961-38819021
Coord A exon
chr7:38819022-38819828
Coord C2 exon
chr7:38819829-38819942
Length
807 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
TTAAATGATAATTTGTTCAGGTG
3' ss Score
4.62
Exon sequences
Seq C1 exon
CTTGGAAATGTATCGCAAGGTTCACAACTTGAGAATTTTGGCCTGTGGGGGGGATGGCACG
Seq A exon
GTAAGCGTCTGTCTGTTAGTATTTGGCAAATAATCTGCCACCTCATTAAAATATTAGGCCGAGCGGTTTAAGCAAGAATTAAACACCTTTCCAGCAGGGGGAAGCATTTGACAGTCTGTGAGCCGAGCAAAAGTTAATTCTCCTGGGACATAACACTATGACTATTCAGATGAGTTGTGTATTTGAGTTTTCTGACATGTAATGCTGAACTGCGCATAAGTATTTGTTAATAATTGGCAATAATCTGCCACTTTATTTAAATATTAGGGTGAATAGTTTATGGAAGAATTAGAAACCTCTCCAGCAGGGGGCAGTATTTCACAGTCTGTGAGCCAATCAAAAGTTAATTCTCCTGAGTCATAACACTATGACTATTCAGATGAGTCGTGTATTTGAGTTTTCTGACATGTAATGCTGATCTGCGCGTCCTGGTTTATCCCATGCTGTCACATCTCCGTAATCCATTTGTATGAGTAATTAAGAGTGTTAAAGGAGATCTGAATGCAGTCATATTTCATACCCTGACTTTGATCCAAGAGAGAGAAGTTTAAGAATAAAGCCTTTAGCTCAGCTGAAATAAGGATTTTAAATCCATCACTCATCCTCCAGCCTGCTGAATGTGTTTAAACTGAGTTAAACACAAGTTTTTTGGGGTTTACATGTGATTTTTACTATACAAAAGCTCTAACTTGTTAATTAGGTTTTAGATGAAAAAGGTATGTGTGTGATATAAACTTTTTATGCTTGTTAATGGACATTTTGTTCATTTTCTTTTTATATACTGATGTTAAATGATAATTTGTTCAG
Seq C2 exon
GTGGGCTGGATCTTATCTGCACTTGATCAGCTGCAATTAAACCCTTCTCCTGCTGTGGCCGTACTTCCCCTGGGCACAGGAAATGACCTTGCTAGGACGCTAAACTGGGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439:ENSDART00000093009:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
NA
C2:
PF0078119=DAGK_cat=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]