MmuINT0048908 @ mm9
Intron Retention
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91779708-91779970:-
Coord C1 exon
chr2:91779910-91779970
Coord A exon
chr2:91779822-91779909
Coord C2 exon
chr2:91779708-91779821
Length
88 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TTTGCTCTGCCCTCCTCCAGGTT
3' ss Score
11.48
Exon sequences
Seq C1 exon
GCTGGAAATGTACCGCAAAGTACATAATTTGAGGATTCTGGCTTGCGGGGGTGATGGCACG
Seq A exon
GTGAGTTCTGAGAGCCGGGCTCAGGCCTGATGCACATAGCTCCTCCATCTCAGGCCTGACTGACCCACTTTGCTCTGCCCTCCTCCAG
Seq C2 exon
GTTGGCTGGATTCTCTCCACCCTGGACCAGCTGCGCTTAAAACCACCGCCTCCTGTAGCCATCCTGCCTCTGGGCACTGGCAATGACCTGGCCCGAACCCTCAACTGGGGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-Dgkz:NM_138306:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
NA
C2:
PF0078119=DAGK_cat=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAATGTACCGCAAAGT
R:
AGTTGAGGGTTCGGGCCAG
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: