DreINT0008913 @ danRer10
Intron Retention
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4632403-4632684:-
Coord C1 exon
chr4:4632624-4632684
Coord A exon
chr4:4632517-4632623
Coord C2 exon
chr4:4632403-4632516
Length
107 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGA
5' ss Score
6.66
3' ss Seq
TGGTTTTCCTGTTTGTTCAGGTG
3' ss Score
8.93
Exon sequences
Seq C1 exon
GTTGGAGTTGTACAGGAAAGTGCCAAATCTTCGCATCCTGGCCTGTGGAGGAGATGGAACC
Seq A exon
GTAAGACGCAGTGCATGATGGGAAAATTTTTGTCTATATTGAAATGAATCTTTCTGTATTTTCGGAGAGGTTGTGTGTTTCTGACAGTGGTTTTCCTGTTTGTTCAG
Seq C2 exon
GTGGGCTGGATTCTGTCGGCTTTAGATGAGCTTCAGATGAACCCTCAGCCTCCTGTGGCGGTACTTCCTCTTGGAACAGGAAATGACCTTGCTAGGACACTCAACTGGGGAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578:ENSDART00000093005:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=FE(16.0=100)
A:
NA
C2:
PF0078119=DAGK_cat=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTGTACAGGAAAGTGCC
R:
TCCCCAGTTGAGTGTCCTAGC
Band lengths:
170-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]