BtaINT0048724 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77239823-77240068:+
Coord C1 exon
chr15:77239823-77239879
Coord A exon
chr15:77239880-77239999
Coord C2 exon
chr15:77240000-77240068
Length
120 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTGCTCCTCTCCTCCGCCAGCCA
3' ss Score
6.93
Exon sequences
Seq C1 exon
ATAAATTTCCGCTGTAAGCCATCCTTCCGTGAATCGGGCTCCAGGAACGTCCGTGAG
Seq A exon
GTAAGTACCCGGGGTAGTTAGGGCCCCGAGTTTCCCAAGTGGGCCTCTCGGCAGTGACTCCAGAGCATCTCTGGGCTTCCGCCCGGCACTCAGCCCAGTGCTGCTCCTCTCCTCCGCCAG
Seq C2 exon
CCAACCTTCGTGCGGCACCACTGGGTACACCGGCGACGCCAGGACGGCAAGTGTCGGCACTGCGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(28.3=73.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCCGCTGTAAGCCATCCT
R:
CTTCCCGCAGTGCCGACA
Band lengths:
122-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development