GgaINT0054684 @ galGal4
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22966891-22968417:-
Coord C1 exon
chr5:22968361-22968417
Coord A exon
chr5:22966960-22968360
Coord C2 exon
chr5:22966891-22966959
Length
1401 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TCTTTATTTTTTCCCTTTAGCCC
3' ss Score
9.82
Exon sequences
Seq C1 exon
ATAAATTTCCGCTGCAAACCTTCCTTCAGGGAGTCGGGATCTCGGAATGTACGGGAG
Seq A exon
GTGAGACATGAGCCTTGGATGCTGCCTATGGCTGAGCCCTTGCCTTTCCAGTTTGGTTGCAAAGGGATCAGCTGCTGCCAGCACACTGCCCATCAAAGTGCTGGCATTGTGCTGTCTTCTGGCTCCAGAGGGGAGGTGCAGTAAAGAATGTTTCCTTGCCAAGCAGCAGCACAGTCTGGGTGTAAGAAGAGAGGAGATTGCAAGCAAAAGACAGAGCATCTGCTGCTTTGCATGTTATATAGCTCCTGTATCTGCATGGGAGGAACACACAAGCAGTGTTTCCTGAGAGGGGCAAAGAATCCCTCCTTTGCTGATGTCCAAGCCAATGGAGGAGGCTGTGGCAAGCAGCAGTTCCCCAAGTTTCCCCCAGTTTGGCAGGGGCAGCACAGGCTGAGTACTTGCTTTATCACTCAGCTTTGCCCTGGGTGCCACGGGTGCTCCGTACAGCAATGGAAGGCGCCCACGGTGGTACTGTTGGACTTCTTCTGTCTGCATTGTAATGTAGTGGGTGTAAGCTGAGGCCTGGGACCTGCCTGCTGAACTGCACTAGTGAAGCACCTGCCAGCCTTCGTGGTTCATCCTCCTGCCTCTCTCCAATACTCCTCAGTTGACCTAAGGGCCTCCCATTTCCATAGAAAAGCATTCTTCCAGAATTTTTGCTGCCTGGGTCAGTCCCCCTACAATACTTGAAGACCCCACTGCAAGGTATCCCTGCTTGGACCATCCTGCAAGCACCAGCCCTTACCCACAGTGAGGCTGTGGGCAGGGAGAAGGTGCCCATGAGCAACTCTGTTTCTCTCCTTGCAGCAGGTCAGCAGGATTTTATCTGAGGAGAAGAGCAGAGTGAATTGGGCATGGGGGCCTTGGGGCTGCTTCTTTCCTTGAAAAACACTGTTAGAGCTGGGCAGGTTGCTAGGAGCAGGCAGCTGACTTGGCTGCAGGCACTCCCACCATCTTTCTATGTGCCAAAACTGTGTCTCACGGGATTTTCACTTTGCACTGGCACCGTTTTCACCCTTCACTTTGTCATCCAGTCAGAGATATTAAGAGATAGAGATGTCATTTATGGCCAAAGTAACATTATAGACTACTGCTTACCCACTCTGTTGCTCCCTTTCTGTGATTCTGTCTTCAATTTCGGATGCTTCCATTCTGATTTGGTTCTTTGTTTTGTCTTGTTTTGATTTAATTTCCTCTTCTGTGAGCACCACCATTTGGTCTTGTGCCCCCAAGTTCTTTGGCTTTGCCTTCTCAGAGGTTTGGTGCTGGTGCACATGGGCAGCTGGCTTGCTGCAAGAGCAGAGGTTCTGGCTGGCCTGTGTCTGTTCCTCTTGCCTGTTCCTGTGTCCCTGTATGCATTGGGACTTTCACTTTTTTTTTCTCTTTATTTTTTCCCTTTAG
Seq C2 exon
CCCATAGTTGTCCGGCATCACTGGGTGCATCGGAGGCGACAGGAGGGGAAATGCCGGCAGTGCGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(28.3=73.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]