HsaINT0047429 @ hg19
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:2857]
Coordinates
chr11:46391044-46391559:+
Coord C1 exon
chr11:46391044-46391100
Coord A exon
chr11:46391101-46391490
Coord C2 exon
chr11:46391491-46391559
Length
390 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTTTTCCCCTTCTCCCCCAGCCA
3' ss Score
9.97
Exon sequences
Seq C1 exon
ATAAATTTCCGCTGTAAGCCGTCCTTCCGTGAATCAGGCTCCAGGAATGTCCGCGAG
Seq A exon
GTAAGTGCCCAGGGTGGTCAGGGATGGGGCCACCCTAAGATTCCTGCATGGGCCTCTGCGCAGTGCCTCTGGAGTGCCACCAGGGGGCTCGGCTCCCTCTAGGCTGCTGCTCACTGAGGTCTGTCTGAGGTCTGCCATGCGGAGGCCTAACTAGCGCTGCCTGCGGAGTGGGTGGGACAGCTTGTGCCTCCTGGTGCTTCCCAGCCTTCTCTGTCCCTCTGAGTCTGAGCCTCCCCCAGGCCATGAAGAGAGTCTTTAGCCCCTCCTCCACTCATGCGCAGGACTGCAGAGCGCTTCCTGCAGCCCCGTGTGTTGAGCCGTGTGGGCAGTCCTCAGGACTGTGCCCCTGCCCACCCCTCACCCAGTGAAATTTTTCCCCTTCTCCCCCAG
Seq C2 exon
CCAACCTTTGTACGGCACCACTGGGTACACAGACGACGCCAGGACGGCAAGTGTCGGCACTGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-DGKZ:NM_003646:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(10.3=31.6),PF0013017=C1_1=PU(0.1=0.0)
A:
NA
C2:
PF0013017=C1_1=PU(28.3=73.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)