RnoINT0047116 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80852949-80853404:-
Coord C1 exon
chr3:80853348-80853404
Coord A exon
chr3:80853018-80853347
Coord C2 exon
chr3:80852949-80853017
Length
330 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
ACCTTTCTGTCTTCCTCCAGCCA
3' ss Score
11.26
Exon sequences
Seq C1 exon
ATCAATTTCCGCTGTAAGCCATCCTTCCGTGAATCAGGCTCCAGGAATGTCCGTGAG
Seq A exon
GTAAATGTCCAGGACAGCAGTAAGGAGCATTGAGGCCCAGGCTCCTAAGGGATCTCTGCAGTTCCCTACGATTACCACCAGGGGGGTCAGCTCCTAGGCTGAGGTTCTGGGGTCACCCACAGGGAAAGTCAGCTGTCCTGTCTACAGATAGGAAGGGTTCCACATGTGTATTAAGGGATTCAACCTTCCCTCCAGACTACAGGGCTCATTCCCCCGTGGAGTCCCTTTCATGTCATTACAAGGGACTGCAGAGGGCTTTTTGTGGACTGAGTTCAGGGCCGTATCTGTCCAACCCTCACCCATTCCCATGACCTTTCTGTCTTCCTCCAG
Seq C2 exon
CCAACCTTCGTAAGACACCACTGGGTCCACAGGCGACGCCAGGATGGCAAGTGTCGGCACTGTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(8.8=26.3)
A:
NA
C2:
PF0013017=C1_1=PU(28.3=73.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]