BtaINT0049270 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147917396-147917884:+
Coord C1 exon
chr1:147917396-147917505
Coord A exon
chr1:147917506-147917781
Coord C2 exon
chr1:147917782-147917884
Length
276 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGTG
5' ss Score
4.58
3' ss Seq
CATGCTTTGGAATCTTTCAGTAC
3' ss Score
5.95
Exon sequences
Seq C1 exon
GCTGGCCCCCCCTCACCTGGCTGGTGATCGATGGGAAGCACCTGACCAAGCCCCCCAAGGACTGGAACCCGGCAGTGCAGGATGCGGGGCCCGGGACCGCCTACATCGAG
Seq A exon
GTAGTGCCTTTCTGAGCCCCGCGCTCGGGCACCTCCATGTGTGCTTTTCCTTCACCCCAGAAAGGCACGGTGCCTCACCCAGAGCCGCCCCTGCTGCCTCCCTGGGGACCACCTGTGTGCCCTGTCGCCCCTCACCCACCCAGGGTGAGCCTGACGTCAGCTGAGGGCATCACCTCGAGGGCCCGGGCATACCGTGGGCTCTGGTCGAACCTGTGGTGAGTGAAGGACAGCCTCCAGAAATGTCACCTAATGAGCTCATGCTTTGGAATCTTTCAG
Seq C2 exon
TACAAAACCAGCAAGGAGGGAAGTACGGTGGGAGTGGCGGTGTCCCATGCGTCCCTGCTGGCGCAGTGCCAGGCTCTGACCCAGGCGTGCGGCTACTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495:ENSBTAT00000061028:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGGTGATCGATGGGAAG
R:
CTTCTGAGTAGCCGCACGC
Band lengths:
196-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development