RnoINT0047699 @ rn6
Intron Retention
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13092027-13092615:+
Coord C1 exon
chr20:13092027-13092136
Coord A exon
chr20:13092137-13092512
Coord C2 exon
chr20:13092513-13092615
Length
376 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCTTCCTTGCAATTTTACAGTAT
3' ss Score
6.41
Exon sequences
Seq C1 exon
GTTGGCCCCCCCTGGCCTGGCTGGTGATTGATGGGAAGCATCTGACCAAGCCTCCGAAGGACTGGTACCCGCTGGCCCAGGACACAGGGTCCAGGACCGCCTACATTGAG
Seq A exon
GTAAGGCCATTCTCAGTAGTGCACAGGCGCATCCCTCAGGCTCAGGCCAGGGTTTTATAAAAAGACAACTACTTAATACTTTTAGGCTAAGTGCTCTCCTAATTTCTACCTCTACCCCAGATATATATAGTGTCCTATAGAACCTTAGATGGGTCATGTCAGGATTTACTCTGACCTAATTCATCCCTGACGACTGTCCTTCCTAGGACATGGGCAGTTAAGATGCAGCTGTGTGCACTGCTGTCCTCTAGCACTGTCCCGGGTCCCCTAAGAGCCACATTAGAAAAGCTAAGGGAGAGATGATTCAGCTACTGCTTCTTAAGCGCTGTGGTTACAGAAATTTATGTTGTTGTTTCTCTTCCTTGCAATTTTACAG
Seq C2 exon
TATAAAACCAGCAAGGACGGCAGCACAGTAGGGGTCACCGTACCCCACTCATCCCTGCTGGCGCAGTGCCAGGCCCTGACCCAGGTGTGTGGGTACACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212:ENSRNOT00000066017:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGCTGGTGATTGATG
R:
CCCACACACCTGGGTCAG
Band lengths:
190-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]