HsaINT0048077 @ hg38
Intron Retention
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46534004-46534687:+
Coord C1 exon
chr21:46534004-46534113
Coord A exon
chr21:46534114-46534584
Coord C2 exon
chr21:46534585-46534687
Length
471 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTTTCCTTGAAATCTTTCAGTAT
3' ss Score
7.12
Exon sequences
Seq C1 exon
GTTGGCCCCCGCTCTCCTGGCTAGTGATTGATGGGAAGCATCTAGCCAAGCCCCCAAAGGACTGGCACCCTCTGGCCCAGGACACAGGGACTGGGACTGCCTACATTGAG
Seq A exon
GTAATGACTGTTCCTAACTTAGAGAATGTAAAAACATGTCCCACAGGCTTAAGTCTTGCTTTTCATAAGAATGTAAGTTGCTATTCTTTTTTGTTAAGTTTCGGCCTAAGAGTTCTTGTTTTATCTCTGCCCTGGAAATACAGAGTGTCATATAAATCCTTGCTCAGATCCTTCCAGGTTTCTCTCTCATCTAATTCTCTCCTAACTGGCTCCCTGGGGATGCAGACAGTTATGAGGGAGCCCATGGCGCACCATTACCCTCGGGCACCTGCCCAAGAGGAGCCACAACTTCCACTGAAGCATCCCCTCAGCGGCCAGGGTTTTGCCATGTACCTGGGCTGCTGGTTAGAGGCCGATGGTTAGAGGAGAGACACTGACCACTTCTTCTTTTGAAGATTCTACCAGTTTCCATTCTGTCTGTTGTCACCTCTAGAAATACCACATCATGTTTTTTTCCTTGAAATCTTTCAG
Seq C2 exon
TATAAAACCAGCAAAGAAGGCAGTACGGTGGGGGTCACAGTGTCCCACGCATCCCTGCTGGCACAGTGCCGGGCTCTGACCCAGGCGTGCGGGTACTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305:ENST00000400274:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCTCTCCTGGCTAGTG
R:
CTTCTGAGTACCCGCACGC
Band lengths:
206-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development