MmuINT0049534 @ mm10
Intron Retention
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76297755-76298362:-
Coord C1 exon
chr10:76298253-76298362
Coord A exon
chr10:76297858-76298252
Coord C2 exon
chr10:76297755-76297857
Length
395 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
3' ss Seq
TCTCCCTTGAAATTTTACAGTAT
3' ss Score
6.4
Exon sequences
Seq C1 exon
GTTGGCCCCCCCTCGCCTGGCTGGTGATTGATGGGAAGCATCTGACGAGGCCTCCAAAGGACTGGTACCCGCTGGCCCAGGACACAGGGTCCAGGACTGCCTACATTGAA
Seq A exon
GTAAGGGCATCCTCAATACTGCACAGACACATCCCTCACAGGCTCGGGCCTGGTTTTTATAAAAAGATAACTACTTAATACCTTTTAGGCTAAGTGCTCTCCTAATTTTTACCTCCATCCCAGATATACATAGTGTCCTATAGAGCGGTAATTGGGTCATGTCAGGATTTACTCTGACCTAACTCATCCCTGACTGTCCTTCCTAGGACGCGGGTGGCTAAGATGCAGTTTGTGTGCACTGCTGTCCTCTAGCACTATCTCAGATCCCCTAAGAGCCACGATAAAGGCAAGGGGAGAGGTGACGCCAGCTGCTGCTTCTTAAAGAGTCTTCAGCCTCCTTGTCCGGTGTGGTGCAGAAGTATACATTGTTGTTGTTCTCCCTTGAAATTTTACAG
Seq C2 exon
TATAAAACCAGCAAAGAAGGCAGCACAGTAGGGGTCACCGTATCCCACTCATCCCTGCTGGCGCAGTGCCAGGCCCTGACCCAGGCGTGCGGGTACACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231:ENSMUST00000160048:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(16.3=73.0)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types