BtaINT0049278 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147877172-147883800:+
Coord C1 exon
chr1:147877172-147877243
Coord A exon
chr1:147877244-147883680
Coord C2 exon
chr1:147883681-147883800
Length
6437 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTCTGTGAAACTGTTTCAGGAG
3' ss Score
7.35
Exon sequences
Seq C1 exon
GTGACATCACTCAAAAAGGATATGAAAAGAAAAGGGCAAAGCTGCTTGCACGCTGCGTACCCCTCATTCAAG
Seq A exon
GTGAGGTTAACATAGGTCTTACAAAACTGATTTAAAAATTGGTATTAGAGTTTGACTTCGGTAGTTTCATATTTTATTAATAAGGGCTGGGAAAATAATGTGTCTAATATTAAATTATAAAATCCAAAGTCATAGATTAAAGTTTATATCTCTGGTTTGGTATAGATTTCATCCCCAAATAGGATTTATGTTATTTTTATTATCATAGACCATGATTATTTTTATGATTTTAGTAAAGAACATTTCCTTACTTTGGTTTGGAACACATATTATAAAGATGTGAGTTCTCCCACTTTATTATTGATCTTCAGAGTCAGCACCTTCAGTGTTTTGGCACAGTTTTTGGGGGTGGAATTTAAGAAGCTGATTTTAAAATATATGTAGAAGTTTGAGACTTCCATGGCAGTCCAGTGGTTAAGACTCCATGCTTCCACTGCAGGGGGCACAGGTTCCATCCCTGGTCAGGGAATTAAGATCCCACATGGCTTGTGCAGCAAGGCAAAAAAAAGAAGTTAAGTATTTTATATATAAATTTAAAGGGCTAAGGGATTCAAAATAATGATAAAAAGGAAGAATGAGATTGGAGGATTTGCTGGTTATGATATGAGGAGTTAATAGCAAGCTGTCATTAAGACAGCCTGGTTTCACACAAGGGTAGATAGCTCTATTCACAAACAGAACATGGACCCAGACAGACATGTGTGGCTGTGGGGACCAGGTTTATGGTGGGGTTGGTGTTGCAGCTCACGATGCCGGCACAGTTCCCTAAGACACAGAAACCAAATATGAAGGGCTTTAGTGAGAAAGGCAAAAATTATAGCACCTTTGGAAGACTGTGTATGAAAACTGTCACCATCTCTAGACAGAAGGAAGGATTTCTCAAGTCCCTGAAGGTACCAAAAAGCAGCAACTGAAAAGGAAAAGATTGGTAAAGTAGAGTGTGTTAAAATTAAGAATCATGTTTTATCAGAAGTTCCCATAAAGAGATTAAAGACAAGCCACAGTATAGGAGAAGATGATCGTAACATACATAAGAGAAAAAGGGCTAGAGTCCAGAGCCGGTGAAGTCGAAGCATCCAGGAGACCTTTTGCCAGAGTGGGAGTGGTCTGCAGCCCCATTGTCCAGTCCACGGAGCACCTCCCACGTATGGCTTCTGAGCACTTGAGGTGTGGTCGCATGACTAAGACACTGCATTTTTTAAATTTAATTTTGATTAATTTAAACTTTATAAAGAGCCAGAAAGTTCCCCCATGTGATTTTTTTTAAAAAGCCCAGTAGGAAAATGGGCTAAAGACTTGCATAAATATTTTACCAGAGGAAACCCTAATTGTTAGCAGGCAAACGAGAAGCCCGCTGGGCTGCTCACAAGGCCGTCTGTCGCAGGCCAGTGCCCAGGCAGCACCCCAGACAAACGGCAGGACCCCATCCTCGCTCAGGTGCTGTTGTTTTATACGTTGAAAGCTGGGTGACTGCTCACTTGGCTATTGGAATTAGTAACCGTCTTGGTTTGAATAGAAGACAAATATGTAAGAATCAATGGCTTTTCTCTGGCAATATTTCTGTTAATAAAACAGCTCACATTCATAATGGCAAAAAAACTGTCGAATGTTTTTAATACATTTAGCAAGAAACCCACAGGATCTATGTTAGGATCATACAATCTATTTGAAAAAAGTAACCAGGATCCTAAAATATGAAGAAATATACCAATATCTTAGATGCAAAAATTTAATATTATAAAAATTCAGTTCAGTTCAGTCGCTCAGTTGTGTCCGACTCTCTGCAACCCCGTGAATCGCAGCACGCCAGGCCTCCCTATCCCATCACCAACTCCCGGAGTTCACTCAGACTCATGTCCGTCTAGTCGGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCAGTCCTTCCAATGAACACCCAGGACTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTTGGCGCTCAGCTTTCTTCATAGTCCAACTCTCACATCCATACATGAGTAGTTTCTAAATTAATATGTGACAAAAATAATCCAGTCTGAATAGCAGTTGTTGATTTTTCTTTTTCCCCCAAATCTGGCATTGGAAATAACTCACTTGGAGGAGAAAAGTTCTGAGAGTAGCTAGTACATTGTTGAGGAGGAATAGCAGGGAGAAAGGCTTGGCCTTCAAGGTGTTAAACCTGGTCACGTGCACTTGGCAGTCCCAACCACAGGGTGTTGGTAGACACGTGGACAACTGAACAGTGTATGGGGAGGGCGTCTAGAAACGACTCAGGAGAATTCAAAGAAGGGAAGGTGTATGTAACTGGTGCCATGCCTGTGGAGGCAGCAGTGGGACCCCCTTTCCTCTGCAGCATTAGTGAACGTAAACTTCAGGAGTAAAACTCTAAGTATGTTTGTAATTACAGAATACTATAAAGTTCAGGAGAATATTGAATAATGTTTGCCTGATGACAAGATGAGAGACCTGAGGGGAAAAAAAAAGGTTATGATTGTCTCTCTAGAAATGAAGCACTACAGAGTGACTGAGCTGCGGCCGGCTGGCCATGGCCTGGGGGCATGTCCAGCGTAGGGTGGGGCCTCTAGCTGACCAGGGCTCCCTGCAGGTCCTTTGGGGGCTCCTTGCATGCATACATGCTCACTCAGTCATGTCTGACTTTTTGCAACCCTGTGAACTGTAGTCTGCCAGGCTCCTCTGTCCATGAGATTTTCTAGGCAAGAATACTGGAGTGGGTTGCCATTTCATTCACCAGTGGATCTTCCTGACCCAGGGATTGAACCCACATCTCCTGCATTACAGGCAGGTTCTTTACCACTGAGCCACCTGGGAAGCCCTTTGGGGGCTCCTTAGCTGGATAGAATTAATAGAATTCAAATAAAAGGACGTATGGATGAGCAGTAAACATTAACATATGTTCAACCTCACTGGTTATGCTGCTGCTGCTAAGTCTCTTCAGTCGTATCCGACTCTGTGCGACCCCAGAGATGGCAGCCCACCAGGCGCCCCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGGGAAGTCGCTCAGTCATGTCCAACTCCTAGCGACCCCATGGACTGCAGCCTAACAGGCTCCTCTGTCCATGGGATTTTCCAAGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTGGGCATGCAAATTAGTGAACCATTCTCCTGTCAGATTGGCAAGATTCTAAAATTTGTAACATGCAGTGCTGACAGAGACATGGGGAAATGGCACCCTGTGGGAATGCGAATGCTGTGGCCTGAGAAGTTCTCTCTTGATACCTGTTAAGACTAAAAATATACCTACTCTTTCATCCAGTGGTTTCCCATTGGGCTTTATATCTTTCTTAAATAAATTAATAGATCTCAATAAAAGCACTGTATTTTGGAATAAAAATGCAAGGATGTCCCTATATTTACACATCACTTTGCAAGCATACCTGTTTATAGTGCATAATGCTTAGGATTCTGTGTTCTCCATTATGGATTTTAGGGAAATTTGTTCCAGTCAGTCAAGAAACAAAAGCCAGAAGCAGTGCTGATCAGTATTGCTGCATGTTGCATACATGTATGTGTGTATATGTTCAGTTTTGAAGAGCTAACGAACACTCCAAACCTGGTACATAAACATCAGCAATGGCAGCATTCTGCGCCCACATCTGGAGGTCGGCCAGTCTTGGGGGCAGCTCCTTCTTGTCTGCAGAGCCAGAGCTGGTGTCCCAGGGGCTCCTCAGTCACAGAGGTGCCTGAAGGCTCAGGCAGCAGAGTGAGGGCCCCCACGTCTCCTGTCCCCTCTGTCCTCTCTGTGTGTCATCCTAGGGAGCTGGGGTCAGGTGGCCTTTTCAGGAGCAGTGTCAGAGGTAATGACCCCCTGAGGCCCAGGTGGGGCAGTTCAGATCAGGTCAGCCACTCAGTCGTGTCCGACTCTTTGCGACCCCATGGATTGCAGCACGCCAGGCTTCCCATCCATCACCAACTCCCAGAGCTTGCTCAAACTCATGGCCATTGAGTCAGTGATGCCATCCAACCATCTCATCCTCTGTTGTCCCCTTCTCCTGCCATCAATCTTTCCCAGCATCAGGGTCTCTTCTGATGAGTTTGCTCTTCGCATTAGGTGGCGAAAATATTGGAGCTTCAGCTTGAGCATCAGTCCTTCCAATGAATATTCAGGACTGATTTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGATTCTCAAAAGTCTTCTCCACACCGCAGTTCAAAAGCATCAATTCTTTGGCACTCAGCTTTGTTTATAGTCCAACTCTCACATCCATACGTAAATACTGGAAAAACTATAGCTTTGACTAGACAGACCTTTGTCAGCAAAGTAATGTCTCTGCTTTTTAACATGCTGTCTAGGTTGTTTATAGCTTTTCTTCCAAGGAGCAAGCATCTTTTAATTTCGTGGCTGCAGTCACCATCTGCAGTGTTTTTGGAGCCCAACAAAATAAAGTCTGTCACTGTTTCCATTGTTTCCCTGTCTGTTTGCCGTGAAGTGATAGGATCAGATGCCATGATCTTCATTTTTTGGATATTGAGTTTTAAGCCAGGGTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTCTCTTTCTGCTATAAGGGTGATGTCATCTGCATATCTGAGATTATTGATATTTCTCCTGGCAGTCTTGATTCCAGCTTTGCTTCATCCAGCCCAGCATTTTGCATGATGTACTCTGCATGCTGCTGCTGCTGGTAAGTCACTTCAGTCGTATCCGACTCTGTACGACCCCATAGACGGCAGCCCACCAGGCTCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCGTGAAAGTGAGAAGTGAAAGGGAAGTCGCTCAGTCATGTCCGACTCCTAGTGACCCCATGGACTGCAGCCCACCAGGCTCCTCCGTCCATGGAATTTTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTGCCTTCTCCGTACTCTGTATATATAGGTTAGATAAGCAGGGTGACAGTATACAGCCTTGACGTACTTCTTTCCCGATTTGTAACCAGTCTGTTGTTCCATGTCCAGTTCTGTTGCTTCTTGACCTGCATACAGACTTCTCAGGAGGCAGGGAAGGTGGTCTGATATTCCCATCTCTTGAAGAATTTCCCACAGTTTGTTGTGATCCACACAGTCAAAAGCTTTGCTGTAGTCAATAAAGCAGAAATAGATGTTTTTTGGGATTTGCTTGCTTTTACGATGATCCAGCGGATGTTGGCAAGTTGATCTCTGGTTCCTCTGTCTTTTCTAAATCCAGCTTGAACATCTGGAAGTTCTCGGTTCACCTATTGTTGAGGCCTTGGTATTTTGAGCGTTACTTTGCTAGTGTGTGAGATGAGTGCAATTGTACGTTAGTTTGAACATTCTTTGGCATTGCCATTCTTCGGGATTGGAATGCAAACTTATCTTTTCCAGTCCTGTGGCCACTGCTGAGGTGGGGACAGGCTGCTGCTTTTTGGGGAGTGCTAAGGGCTGGTGGCTAAGGCTGTTTTTCTTGGACAATTTGAAACAATCTAGTGCTCAGGCAGGACCAGGGACTCTGTTAAATGACCCTGTAGGCTTGTGCTTGTCCTTTACTCCACACATGACATCCTGATGGCCTGGGTGTTGGCTGGCCATGGGTGTGCCAGTCATGGGGCTGCAACAGGCACAGAGAGCTGGCCGCCCGTCAGGGTGGAGACACAGGTGTCACAGGCCCAGGTGGTTAGCACCTGAAGCCTCCAAGCTTATCATCGGCTTTCTTCCTGTGTCTCAGGGCGGCTGTCAGCACCCTGGTGATGGCTTTGTGGGCTGCTTCCTGCTGGGCTTGCTGACACTGGGGCCAGTGTGGGGGCAGGGAGGGGCGTTCGAGAGAGCTGGCCCCATGCACCGTGCGCACAAGCTGGGGGCCCAGGGCTGCTGACAGGGAGGGGCTGGAAGCTGACGTCAATGTCTCGGCCCCAACCTCCAGATTTAGGGTCTTCTGGGCATTGGGGCCCCAGGCGTGCATGGTTGTACAGCAGGGGCTGTGCAGCAGTGTGCGAGAGGTGTGTGCTATTCTACATGGGTTTTTCTATTGTTGGAAAAGCAGGTTTTTTACTCACGGTGTTTCTGTGAAACTGTTTCAG
Seq C2 exon
GAGTAGACCCCTCCCTGCAAGTGGAGAATAGCATCCTTGGGCCCGCACAAGCCTCGGCCCCCGCGCCCAAGCAGCCCAAGCCGCGGCCCAGCAACGCCCGGGACGAGCGCTTCCGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495:ENSBTAT00000061028:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=NA C2=0.878
Domain overlap (PFAM):
C1:
PF051207=GvpG=FE(51.1=100),PF064646=DMAP_binding=FE(20.9=100)
A:
NA
C2:
PF051207=GvpG=PD(0.1=0.0),PF064646=DMAP_binding=FE(34.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development