MmuINT0049542 @ mm9
Intron Retention
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75784235-75790518:-
Coord C1 exon
chr10:75790447-75790518
Coord A exon
chr10:75784352-75790446
Coord C2 exon
chr10:75784235-75784351
Length
6095 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
GGTATAAAAATGTGTTTCAGGAG
3' ss Score
4.28
Exon sequences
Seq C1 exon
GTGACATCACTCAGAAAGGATATGAGAAGAAGAGGGCGAAGCTGCTGGCTCGGTACATCCCCCTCATTCAAG
Seq A exon
GTATGGGCAGCGTGGCCTTCCGCTGTTGTCATAACAAACACTGTCTTGTAGAACTTGATACTGGGGTGTGGATGTAGCTTGGTGGTAGAACCCTTGCTAACATGGGATAGGTCTTGGGTCCAGTCCCCAACACTGCAAGCAGAGAGAACTGATAATAATAAGATAATAAGGAAGAACTGATTTGGGATTTTAAAAACTGGTCAACATTTCATATTTTATTAAGGGCTGAATAGTATGTTTGTTTTTAGATAACAAAATCCAAAGGAATAGATTATAATTTACAGCTTTGGCTTGATATAGGTCTCACTCCCAAATAGCACTTATTCTATTTCTGTGGTCACAGAGTAGCCTCATACATTTCCTTAGTAGGCAAGGACACACTATAAATTTTTGGATTCTTTGCACATTAATTTGTAGATTTGGCACATTCATTATTTTGGATATTTTTAATAGAACTTTATGACCTAATTCTAAAATGTATGTCATCAGTACAAAAGGTCAAGAGATCTAAAGCATGATGGGAGGAGTTGTCTGGCTAGTTATTAAGAATTATTATGTAAATGATTTAATTAATCAATTAAAATGAAGAAATCTAAAAAGAGAGAGTTTTCTCAGGCTATCATCCCTGAGAATAGGTTACTTTGCAAGGACAGGTGGCTAGTGAGATAGAAAGGCCGGCCCAGATGCACACACACACACACACACACACACACACACCCATATGGCCTTGGTTTAGGAGAGAAGCATGTGGTTAGCGTGTTGGCATAGATCCCAGTACCTATGTAAAATATGTAAAATAAGGCACCAAAGTTAGCTTCAGGTGAGTTAGGCCCAAGGGCCAGAGGCAGAGACTGTGGAGCCTTGGGAAGATCTTAGGGGGAGTGGCGCCATCTCCAGGTAGAAAGGTTTCTTCAGTTGCTGGAGATGCAGCTGGTACAACAGCCAACATACGAGAAAAGATGTCCGACAAGTTGGGATACATTCAACTTAATAGCTTCTCTTTGTAAAATCAAAAGGTACCTCAAAGAGATCGAGAAGCTGCAGGCTGTGGGCAGATGGTGACAATATAAGTGATGTGAGAAATGGCCCCAGAGTGTATAGACAGCACTGCCTGGTGGCTCTTTCTGCAGCTGCAGACAGGCATCTGAGTGGCCAGGGAACAACTGAGCACTAGGAGGCTGGCCTGTCCAAGAGTCCAGATTTCTTCATGTGATGAGGAGATTGGGGGGAGACTTTCCTTTCCTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTCCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTTCCAAGTGCTGGGATTAAAGGAGAAAATAGTCAGCGATGATGATGATGACACCTAACTTCTCAGATAGTCAGAGAATTGCAGATTAAAACCTGAGATCCCTGTTAGAGTCAGTGTAGATGTATCTGTGTCACCTGATGCCACAAGAATGTCCATCATGACCCTAAACTACCAAGACCTCCAACCAGCCTTGCTCAGAAGAACCCAGACATAGATTGCCAGAGCATCTGGACCCTCACTGAGACGATGGCTTTGAAGACACCACAAAGTGGTGTGACCAGCATGAGCTCTGAAAACAGACACTGGGGACGCAGAAGCAGGGGGATCTGTGAGTTCCGGGACAGTCTCGTCAACATAGTGAGTTATAGCCAGGGCTATACAGTGGGACCCTGTCTGCAATAGTAGTAGTGATAATAATAAATCAGGTAATCAAGTGATAAAAACTCCAGCAGAGACCCTTATGAAGGAATAAAGAAGGAAAGGAAAGGGGTTTCTAGAATGGAACACAGCATTCCCGGGGGGAAGTGGAATCAGACGGGGTAGGGCACATATCATCTTCAGCCACCCGAGAGCGTTGTTTCTTTTTCGTTCTTTAAACTTTAATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGTGTGCGTGCACACGCACAAGAGGAAGACTCTTGGAGTTGCCTGCCCTTCTGTCTCCTTGAGGCAGGGTCTCTCTGGTTTCTGCTGTGCTGTGCACTCCAGGGCAGCCAGCCTGGGAGCTTCTGGAGATTTTCCTGGTTTTGCTTCCTGTCTCTCCAGCAGGATGCAGGGGTTACAGATGTGTGCAGGGGTTACAGATGTGTGCCACTACATCTGCCTGTTTAAATGAGTGCTGAGGGTCAAATTCAACTTGTTGGGGAAGTATAGTAAGCACCTCTACTTGCTGATCCATCTTGTTAGCCCAGGCTTAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAGGTGGTATAGTAAGCACCTTTACTTATTGATTCATCTAGTTAGCCTAAGCTTTAATAATAATAATGACAATATTTTATAAATAATATATAATAATTAATGCTGCTGCTGTTCCTTCTTTATCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGATCTACCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCCAGCTAACATATTTATTTCTTATGTGTGTGTTTTGCGTATGTATGTGTTTCTGTGTATATCTCCATGGAGGCCAGAAGTGGGTGTCCATCTCCTAGAACTGGAGTTAGAGGTGGTTGAGAGATGTCATGTGAGTTCTGGAAACTAAACTCTGGTCCTCTGTAAGAACAGCAAGTACTGATAACCACCGAGCCGTCTCTCCAGACCCCACGCTTCATTTCTTAAACAGTGCAGTGGCTACATTTCCCCTTATGTATGTAACACTTCTTAAACTGCGCGTGCTTTATACTGTCTGCATCGATATATTGATAAATAGCAGGACACTAGTGTTGAAGATGCCGGTTATATATTGGTATTTTTTTTCATTCAAAACAAGAACAGTAAAATTGGGGGTGTGGTGGTGCACATCTTTAACCCCAGCATCCAGGAGGATCTCTGAGGTTGAGGCCAGTGTGGTCCATATAGCAAGTTCCAGGACAGCCAAACAAACAATAAAGGCCACAGTAAAATTGGGATTGAAGGAAACTGTAAAGCCTATTTTTTTCCAAAAGTCACTACCAACCATTCGCCAGTACAACTACGTATCTTAGCCATTCCCTTCCCTAGCAGAGGGATAAGCATACTGGTTTTCTCCTCACATCACAGTTCTGTTGGTTACCGTTGATAACATGAGGTGGGAAACAAAACGGTAAATACTGGAGAAGAGAAGACCTTTGTGTGCAGGGACATTACTGTGTGCTTGGAAGGCTGCTTTATGTAGCTGTTGGAGTTAGCAAGGAGTTTTGGTTTTATCGCGATTGTAACTTTGGAGAATATGTGATCATTAGTGGCTTTTATCTTTCAGTACTTCTATTTTGAAATAGAAAACATTCATTTAAAATGAAAATACATTGTCAACTACTAATACATTTAGCAAGAAAATTAAAGGGCCTGTATGGGAATCATAAACTATATTTAGAAGAAATACTCAATATCCAAAATATGAAATAACCCTAAATTGCTTAGGTGGAGGAAATTCAGAGAACAGGAAGCATAAGTGGGTAATAAACACTAAATCATGCGCAGATTTACCAGTACATACGGAAATGCAAAGTAGAGTGAACTGCTGCCTTAGGTTAGGAGACTCCTCGTGCTTTCTCTAAACTCACACTGAGACGTGTGAGGATGCAGTACTTGCATCTATTGCTTGGACACGTATGAACCATTGCAGCCTTCCTGGGAAGTTACCTCTTGATTCCTGCTGCAATTAGAAGTGTATCTCCTTGGGGCTGGAGAGATGGCTCAGCAAATAAGAGCATGGCCTGCTGTCTCAGAGGATCTGAGTTCAGTTTCCAGAACCCATGTCAGGCTCTAACTCTAGCTCCAGGGAGATCTGACACCGACTTCTGGCCTCCGAGGGTACCTGAACTCAACGACCACAGAAACACACACACACACACACACACACACACACAACCTAAACTCATGACCACAGACCCACAAACACACACACACACACACACACACACCATGCCTTATATACCTACTTTAAAGCAAATTTAAACCTGGTGTGATCCTTCAGTCCCACTCTTTAGGAGAGCAGAGGCAGGTGGATCTTTGTGAGTTCTGTGAGTTCAAGACCAGTGTGGTCTACATAGCAAGTTCCAGACTAGCTAGGGACACACAATGAGATACTGTTTCCAAACGAATAAAATGTCTTTCCCTCTATGCAATAATTTCAGATCAGTTTTTGTTGTCTTTGTTGGGTCTATCTAAAGGATAAAGGCACCCACATTTCGGAAGGTGTCTATACATCACTGTGTATGTACCACTTCCAAATCCCTCCTTACTGTCTGACACTAAATGTTCTCAGTGAAACGCTGAAGCAGCTCTTTTGCCCAGTAGGGCCACTGTTCAGGATTGTCGTAGATCTGTGTATGTACATGTACATGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGCTCAGACTTGGAAGAGTGAAGCACAGATTTCTAGAGCAGTGTTTCTTATTCTCAAGCACATGTTCTTTCAAGTGCTCTATAACCAGCCCTGCCAGACAGCATCACAGCCCTATTGCGTTGCAGCTTGGAGCAGCTCAGAGAGCAGCACTCGGGGATACAGCAAGAGTCGAGTGATTGAATCTGAGTTGGTGGTTTGTGAGGGTCCCCTCGCTGGCTTCTGGGCTTGGGGGGGGGGCTCATCTGCCTCTGTTTCCTGTTTTCCCACAGGCTTTTTTGGTGCCAGGATTAGCACACTGGACTCCATAGGCAAAGCTGAGCCTAGTAGAGTGAGATGGGTTGTTTCACGTGACCAGCCTTAGATGTCAGGTAGTGCTGTGTTCCTGTGAGGGACACTGACCCAGGATGTCAGGATAGACTCTGCTTGTTCTGGGAGTATGGTTAGGACAGGAGGAGCCAGTGAGATTGCAATGTCCGCTGGCTGGTCTTACAAGGCATTTTAAGTAAAGCTAGGACATAAAGCTTACCCTTACTAGGTTTCAACTGAAGGTGTTAGCAGATTCGGATTGGAATGAGACCAGAGGCTTTGTTTAGTGACTGAACCCTGCTATTCCTCACTGTCGTGTATCCTGGGGGTGGCTGCTATCACTGTGAGCCATTGACCAGCTGAGGATGAGTGGATTGTAGGTGACAAGCTCTGTCAGTCCCTGATTTGAAGACAGAGCCCACAGCACTCTGCCTGGACCAGGTTGCTGGCCTCTGGGCTCCATGCTCTGAAGTGGTTCAGTGTTATTCTTGGTGTTTTATTCTCTACCTCTCCACTGCCCCCCCCCCCCCCCGTATTTAAGGGCCACCAAGGAATGGCTTGAGGTCTGTTTCTCACTTAGAGTTTGATGACACCGTGGACCATAATTGTGTCAAGCAGCACAGGCCAGTTTAGATTTATGGAACAGCCTACATGCATGCAGGAACCAGCTCTTGGGAGCTGTGACCGACACACGAGACTTGAACTGATTGCCATGTTGCCAAGGATATCCCGAGGGAGTAGTTATCATTCCAGTTATGAACCAGAGGCTAGACTAGGTCTTGTGACATGGGGAGAAGGTAGTCTGGATGTGGACATTGCTCTGACCCATGTTCATGGCACGTAATCCCAAGCTAGAGGCTCTTTGTGCTTTAAGAGCCTGACTAATAGTGCAGCATGTACGTGTATGGCCATAGAAGGGAAATGCACACTGTTTCAAATGGGGCTTTTTATAATGGGAACAGCAATTCCTTTACACAAGGTATAAAAATGTGTTTCAG
Seq C2 exon
GAGTAGACCCATGTCTGCAGACAGAGAATAGAATTCCCGGGCCCTTGCTGACGGCAGCTACCGCTAAACCACAGAAGTCTCGGGCTACCAACTCCAGGGATGAGCGCTTCCGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-Dip2a:NM_001081419:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.775
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(51.1=100),PF051207=GvpG=FE(44.4=100),PF064646=DMAP_binding=PU(12.1=16.0)
A:
NA
C2:
PF064646=DMAP_binding=FE(34.2=100),PF051207=GvpG=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: