DreINT0057173 @ danRer10
Intron Retention
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:627954-629526:-
Coord C1 exon
chr9:629407-629526
Coord A exon
chr9:628074-629406
Coord C2 exon
chr9:627954-628073
Length
1333 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
GTGTGTTGCGTGTCTTGCAGATC
3' ss Score
11.28
Exon sequences
Seq C1 exon
GTGTAGATCCGTCTCTTCAGATCGATCACAGGATTCAGTCTTCAGCACCGGCGGCTCATCCGGCCTCCAAACACAACAAACCTCGGCTGGCCAACTCCAGGGATGAGCGCTTCAGATCAG
Seq A exon
GTGCTTCTACATTCCTGCTTTCATGGACATTTCGGAATATTGCACAAAAATTCCACTGAGTACAATACATATTAGCAGGATTCTATAAAAGTATTCAATATAATATAATATAACACAATATAATATAATATAATATAATTTAATTAATAAATAATATAAAATAATATAATATAATATAAAATAATATAATATTATATAATATAATACAATATAATATAATATCACATAATATAATATAATTAATAAATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAAAATAATGTAAGATAATATAAAATAATATAATATAATTTAATTAATAAATAATATAAAATAATATAATATAATATAATTAATAAATAACATTAAATAATATAATATAAAATAGTATAATTAATAAATAAGATAAAATACTTTAATATAATATAAAATAAAATAATATAATAAAATACAATATAATATAATATAATATAATATAATATAAAATATTATAATATAATAAAATATAATATAATACAATATAAAATAATATAATATAATATAATATCACATAGTATAATATAATTAATAAATAATATAATATAATATAATATAAAATAATATAAAATAATGTAAGATAATATAAAATAATATAATATAATATAATTAATAAATAATATAAAATAATGTAAGATAATATAAAATAATATAATATAATATAATTAATACAAAATATAATACAATATAATTAATATATAATATAATATAATATAATATAATATAACATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATTAATAAATAATATAAAATAATGTAAGATAATATAAAATAATATAATATAAAATAATGTAAGATAATATAATATAATTAATAAATAATATAATATAATATAATATAAAATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAAAATAATATAATTAATAAATAATATAAAATAATATAATATAATATAATATAATATAATTAATAAATAACATAAAATAATATAATATAAAATAATATAATTATTAAATAAGATAAAATACTATAATATAAAATAAAATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATGGGGCGTCACGGTCAAATGTGTTTCCTGCTATATTTTGCGCTGTGTTTGTGACAGTGTTGTGTGTGTGTTGCGTGTCTTGCAG
Seq C2 exon
ATCTTCATACAGAAGCAGTTCAAGCAGCTTTGGCCAAATATAAAGAGAGAAAGATGCCGATGCCCTCAAAGAGACGCTCTGTGCTGGTGCAGTCTTCAGTCGAAGCATGCACTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058:ENSDART00000115030:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=NA C2=0.878
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(34.8=100)
A:
NA
C2:
PF064646=DMAP_binding=PD(24.3=68.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGATCCGTCTCTTCAGATCGA
R:
CTGGAGGAGTGCATGCTTCG
Band lengths:
239-1572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]