MmuINT0049542 @ mm10
Intron Retention
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76319467-76327773:-
Coord C1 exon
chr10:76327702-76327773
Coord A exon
chr10:76319587-76327701
Coord C2 exon
chr10:76319467-76319586
Length
8115 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CTCCTGTTGTTGCTGTGCAGATG
3' ss Score
9
Exon sequences
Seq C1 exon
GTGACATCACTCAGAAAGGATATGAGAAGAAGAGGGCGAAGCTGCTGGCTCGGTACATCCCCCTCATTCAAG
Seq A exon
GTATGGGCAGCGTGGCCTTCCGCTGTTGTCATAACAAACACTGTCTTGTAGAACTTGATACTGGGGTGTGGATGTAGCTTGGTGGTAGAACCCTTGCTAACATGGGATAGGTCTTGGGTCCAGTCCCCAACACTGCAAGCAGAGAGAACTGATAATAATAAGATAATAAGGAAGAACTGATTTGGGATTTTAAAAACTGGTCAACATTTCATATTTTATTAAGGGCTGAATAGTATGTTTGTTTTTAGATAACAAAATCCAAAGGAATAGATTATAATTTACAGCTTTGGCTTGATATAGGTCTCACTCCCAAATAGCACTTATTCTATTTCTGTGGTCACAGAGTAGCCTCATACATTTCCTTAGTAGGCAAGGACACACTATAAATTTTTGGATTCTTTGCACATTAATTTGTAGATTTGGCACATTCATTATTTTGGATATTTTTAATAGAACTTTATGACCTAATTCTAAAATGTATGTCATCAGTACAAAAGGTCAAGAGATCTAAAGCATGATGGGAGGAGTTGTCTGGCTAGTTATTAAGAATTATTATGTAAATGATTTAATTAATCAATTAAAATGAAGAAATCTAAAAAGAGAGAGTTTTCTCAGGCTATCATCCCTGAGAATAGGTTACTTTGCAAGGACAGGTGGCTAGTGAGATAGAAAGGCCGGCCCAGATGCACACACACACACACACACACACACACACACCCATATGGCCTTGGTTTAGGAGAGAAGCATGTGGTTAGCGTGTTGGCATAGATCCCAGTACCTATGTAAAATATGTAAAATAAGGCACCAAAGTTAGCTTCAGGTGAGTTAGGCCCAAGGGCCAGAGGCAGAGACTGTGGAGCCTTGGGAAGATCTTAGGGGGAGTGGCGCCATCTCCAGGTAGAAAGGTTTCTTCAGTTGCTGGAGATGCAGCTGGTACAACAGCCAACATACGAGAAAAGATGTCCGACAAGTTGGGATACATTCAACTTAATAGCTTCTCTTTGTAAAATCAAAAGGTACCTCAAAGAGATCGAGAAGCTGCAGGCTGTGGGCAGATGGTGACAATATAAGTGATGTGAGAAATGGCCCCAGAGTGTATAGACAGCACTGCCTGGTGGCTCTTTCTGCAGCTGCAGACAGGCATCTGAGTGGCCAGGGAACAACTGAGCACTAGGAGGCTGGCCTGTCCAAGAGTCCAGATTTCTTCATGTGATGAGGAGATTGGGGGGAGACTTTCCTTTCCTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTCCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTTCCAAGTGCTGGGATTAAAGGAGAAAATAGTCAGCGATGATGATGATGACACCTAACTTCTCAGATAGTCAGAGAATTGCAGATTAAAACCTGAGATCCCTGTTAGAGTCAGTGTAGATGTATCTGTGTCACCTGATGCCACAAGAATGTCCATCATGACCCTAAACTACCAAGACCTCCAACCAGCCTTGCTCAGAAGAACCCAGACATAGATTGCCAGAGCATCTGGACCCTCACTGAGACGATGGCTTTGAAGACACCACAAAGTGGTGTGACCAGCATGAGCTCTGAAAACAGACACTGGGGACGCAGAAGCAGGGGGATCTGTGAGTTCCGGGACAGTCTCGTCAACATAGTGAGTTATAGCCAGGGCTATACAGTGGGACCCTGTCTGCAATAGTAGTAGTGATAATAATAAATCAGGTAATCAAGTGATAAAAACTCCAGCAGAGACCCTTATGAAGGAATAAAGAAGGAAAGGAAAGGGGTTTCTAGAATGGAACACAGCATTCCCGGGGGGAAGTGGAATCAGACGGGGTAGGGCACATATCATCTTCAGCCACCCGAGAGCGTTGTTTCTTTTTCGTTCTTTAAACTTTAATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGTGTGCGTGCACACGCACAAGAGGAAGACTCTTGGAGTTGCCTGCCCTTCTGTCTCCTTGAGGCAGGGTCTCTCTGGTTTCTGCTGTGCTGTGCACTCCAGGGCAGCCAGCCTGGGAGCTTCTGGAGATTTTCCTGGTTTTGCTTCCTGTCTCTCCAGCAGGATGCAGGGGTTACAGATGTGTGCAGGGGTTACAGATGTGTGCCACTACATCTGCCTGTTTAAATGAGTGCTGAGGGTCAAATTCAACTTGTTGGGGAAGTATAGTAAGCACCTCTACTTGCTGATCCATCTTGTTAGCCCAGGCTTAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAGGTGGTATAGTAAGCACCTTTACTTATTGATTCATCTAGTTAGCCTAAGCTTTAATAATAATAATGACAATATTTTATAAATAATATATAATAATTAATGCTGCTGCTGTTCCTTCTTTATCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGATCTACCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCCAGCTAACATATTTATTTCTTATGTGTGTGTTTTGCGTATGTATGTGTTTCTGTGTATATCTCCATGGAGGCCAGAAGTGGGTGTCCATCTCCTAGAACTGGAGTTAGAGGTGGTTGAGAGATGTCATGTGAGTTCTGGAAACTAAACTCTGGTCCTCTGTAAGAACAGCAAGTACTGATAACCACCGAGCCGTCTCTCCAGACCCCACGCTTCATTTCTTAAACAGTGCAGTGGCTACATTTCCCCTTATGTATGTAACACTTCTTAAACTGCGCGTGCTTTATACTGTCTGCATCGATATATTGATAAATAGCAGGACACTAGTGTTGAAGATGCCGGTTATATATTGGTATTTTTTTTCATTCAAAACAAGAACAGTAAAATTGGGGGTGTGGTGGTGCACATCTTTAACCCCAGCATCCAGGAGGATCTCTGAGGTTGAGGCCAGTGTGGTCCATATAGCAAGTTCCAGGACAGCCAAACAAACAATAAAGGCCACAGTAAAATTGGGATTGAAGGAAACTGTAAAGCCTATTTTTTTCCAAAAGTCACTACCAACCATTCGCCAGTACAACTACGTATCTTAGCCATTCCCTTCCCTAGCAGAGGGATAAGCATACTGGTTTTCTCCTCACATCACAGTTCTGTTGGTTACCGTTGATAACATGAGGTGGGAAACAAAACGGTAAATACTGGAGAAGAGAAGACCTTTGTGTGCAGGGACATTACTGTGTGCTTGGAAGGCTGCTTTATGTAGCTGTTGGAGTTAGCAAGGAGTTTTGGTTTTATCGCGATTGTAACTTTGGAGAATATGTGATCATTAGTGGCTTTTATCTTTCAGTACTTCTATTTTGAAATAGAAAACATTCATTTAAAATGAAAATACATTGTCAACTACTAATACATTTAGCAAGAAAATTAAAGGGCCTGTATGGGAATCATAAACTATATTTAGAAGAAATACTCAATATCCAAAATATGAAATAACCCTAAATTGCTTAGGTGGAGGAAATTCAGAGAACAGGAAGCATAAGTGGGTAATAAACACTAAATCATGCGCAGATTTACCAGTACATACGGAAATGCAAAGTAGAGTGAACTGCTGCCTTAGGTTAGGAGACTCCTCGTGCTTTCTCTAAACTCACACTGAGACGTGTGAGGATGCAGTACTTGCATCTATTGCTTGGACACGTATGAACCATTGCAGCCTTCCTGGGAAGTTACCTCTTGATTCCTGCTGCAATTAGAAGTGTATCTCCTTGGGGCTGGAGAGATGGCTCAGCAAATAAGAGCATGGCCTGCTGTCTCAGAGGATCTGAGTTCAGTTTCCAGAACCCATGTCAGGCTCTAACTCTAGCTCCAGGGAGATCTGACACCGACTTCTGGCCTCCGAGGGTACCTGAACTCAACGACCACAGAAACACACACACACACACACACACACACACACAACCTAAACTCATGACCACAGACCCACAAACACACACACACACACACACACACACCATGCCTTATATACCTACTTTAAAGCAAATTTAAACCTGGTGTGATCCTTCAGTCCCACTCTTTAGGAGAGCAGAGGCAGGTGGATCTTTGTGAGTTCTGTGAGTTCAAGACCAGTGTGGTCTACATAGCAAGTTCCAGACTAGCTAGGGACACACAATGAGATACTGTTTCCAAACGAATAAAATGTCTTTCCCTCTATGCAATAATTTCAGATCAGTTTTTGTTGTCTTTGTTGGGTCTATCTAAAGGATAAAGGCACCCACATTTCGGAAGGTGTCTATACATCACTGTGTATGTACCACTTCCAAATCCCTCCTTACTGTCTGACACTAAATGTTCTCAGTGAAACGCTGAAGCAGCTCTTTTGCCCAGTAGGGCCACTGTTCAGGATTGTCGTAGATCTGTGTATGTACATGTACATGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGCTCAGACTTGGAAGAGTGAAGCACAGATTTCTAGAGCAGTGTTTCTTATTCTCAAGCACATGTTCTTTCAAGTGCTCTATAACCAGCCCTGCCAGACAGCATCACAGCCCTATTGCGTTGCAGCTTGGAGCAGCTCAGAGAGCAGCACTCGGGGATACAGCAAGAGTCGAGTGATTGAATCTGAGTTGGTGGTTTGTGAGGGTCCCCTCGCTGGCTTCTGGGCTTGGGGGGGGGGCTCATCTGCCTCTGTTTCCTGTTTTCCCACAGGCTTTTTTGGTGCCAGGATTAGCACACTGGACTCCATAGGCAAAGCTGAGCCTAGTAGAGTGAGATGGGTTGTTTCACGTGACCAGCCTTAGATGTCAGGTAGTGCTGTGTTCCTGTGAGGGACACTGACCCAGGATGTCAGGATAGACTCTGCTTGTTCTGGGAGTATGGTTAGGACAGGAGGAGCCAGTGAGATTGCAATGTCCGCTGGCTGGTCTTACAAGGCATTTTAAGTAAAGCTAGGACATAAAGCTTACCCTTACTAGGTTTCAACTGAAGGTGTTAGCAGATTCGGATTGGAATGAGACCAGAGGCTTTGTTTAGTGACTGAACCCTGCTATTCCTCACTGTCGTGTATCCTGGGGGTGGCTGCTATCACTGTGAGCCATTGACCAGCTGAGGATGAGTGGATTGTAGGTGACAAGCTCTGTCAGTCCCTGATTTGAAGACAGAGCCCACAGCACTCTGCCTGGACCAGGTTGCTGGCCTCTGGGCTCCATGCTCTGAAGTGGTTCAGTGTTATTCTTGGTGTTTTATTCTCTACCTCTCCACTGCCCCCCCCCCCCCCCGTATTTAAGGGCCACCAAGGAATGGCTTGAGGTCTGTTTCTCACTTAGAGTTTGATGACACCGTGGACCATAATTGTGTCAAGCAGCACAGGCCAGTTTAGATTTATGGAACAGCCTACATGCATGCAGGAACCAGCTCTTGGGAGCTGTGACCGACACACGAGACTTGAACTGATTGCCATGTTGCCAAGGATATCCCGAGGGAGTAGTTATCATTCCAGTTATGAACCAGAGGCTAGACTAGGTCTTGTGACATGGGGAGAAGGTAGTCTGGATGTGGACATTGCTCTGACCCATGTTCATGGCACGTAATCCCAAGCTAGAGGCTCTTTGTGCTTTAAGAGCCTGACTAATAGTGCAGCATGTACGTGTATGGCCATAGAAGGGAAATGCACACTGTTTCAAATGGGGCTTTTTATAATGGGAACAGCAATTCCTTTACACAAGGTATAAAAATGTGTTTCAGGAGTAGACCCATGTCTGCAGACAGAGAATAGAATTCCCGGGCCCTTGCTGACGGCAGCTACCGCTAAACCACAGAAGTCTCGGGCTACCAACTCCAGGGATGAGCGCTTCCGGTCAGGTAGGTTCCTAGCTCTGGAAGCGCAGGAGCAGGAGGTGGGTAGCAGCAGGCAGGACACTCGTGTTCTGACTACCGAGGCTTCTGGTTGGGTTTTCTCTGCTAGAATATCCACCAAAGAAGTCGTTATTTTTTACTTGATATCATCGTATTGTTCAAGAAAGCAGAATCTTCAGATAGGTTATTGTTTATTTGTTTGTTTTTCAAGACAGGGTTTCTCTGTGTAACCCTGAATGTCCTGGAACTTGAGTTGTAACCCATGCTGACCTCGAACTTACAAAGATCTGCCTGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGTGTGCACTACTAGGCACAGCTGAGATAGTTTATTTTGATGTCTCACTTTTCTCACATATTGCTTGCATGCAAAGTTTGTATGTTAAATTCATGTGTGCATGTGTGTGTGCATGTGTTTGCATGTGTGTATATGCATGTGTGCATGTGTTTGCATATGTGTGCATTTATGCATGTGAAGATGCCATCTTTTTCTTTTCCTCTTTTTCTTTTTTAGCTTTGAACTTGCCAAGTAGGCTAGCCTGACTGGCCAGTGAGCCCAGTGCTCTTCTTCTTGCTACCCCTCTAGCATTGGGATTATACGCATTCCCAGGTAGTTTTAAAATAGGAGTTCTAGATCCTTATGCTTGCAGTGAAAGCCCTTTACTGACTAAGCCATCTCTCTAGTCTCTGGAGAACCCTTCTCCTCCTGCCTAACAGGACAGCACACTTACTGTTTCTATCCCCTTCTCCACCAGAAACTGGGAGAACTCAGGGATTTCCGTGTACATGGAAGTAGCTATATGATTGGTATAATTTAAATTTTCTGTTAATTAAAATTTTCCACTATTTGGTAATACTTTTTATAAATATTTAAATATATTTAAATTTACTTTGATTTTGGTTTACTTTTAAAAACAGTTTTGCTCTGTGTGTGTGTATGCATGTATGCATGTATGCCATGAATCACACGTGGAGGTCAGAGACAGCTTGCAGGTTTTTCTTCTACTTTGTAGGTTCTAGGGATCTTGGAGGTCATAAGTACCTTTACTTGCTGATCTGACTTGCCCCCTGCCCTCCCCCTCCCTCTTTATTTTAAGACAAGTTCCCATTCTCATGTAGCTCAAGCTGGCCTGGAACTTACTATGTAGTGGAGTACAGCCTTTAACTTCTGATCTTCTCATTTCCATCTCGGGGACTAACAGCCTGGTCACGTACCAAAATGCCTGGTTTATGTGATGCCAGGGTCGGAAGCCAGGGCTTCATACATGCTGCACAAGCATCCTACCAGCTGAGCTGTGTGTATTCAGGTGTGCATGCCTTTGTATGTATGTGGAGGCCTGGTGTGGATGTTGGATGTCTTCTGTAATCACAATGCACTTACTTTTTAAAGATAATATGTGAATTGATTGATGCACATGTTCCATAAACATTGAGACCTCCTCAGTGGGAACCTCCTGAGGACTGAGATGCTCACACTCAGTTCAGGGCCATTGCTTTCAAAATGTGTCTACTTGTTTTGTTCTGCTTGCTTGCTGCTTGCTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCCTTGTGAACCTTCTGATTGACCTACTGACTAGCTAGGCCACCTAGCCAGTGAACCTCTGGGAGTCCTTAGCCCTTTTTTTATTTTTTATTTTATTTTATTTTATTTTATTTTATTTTTTAACTTATAACTAAAAGTATCTGTCAAGTTCAAAAGTTGAGTCCTCAGGCAAAGTAATATTTAGAGGAAGTCCAAGGCATAGGGGTAAGTGGGCAGGCAGGTGATTTTTTTTTCCCCTGCTCGGAGTAAGCCAACAGAAAACCAGATTGTAACCACTGTAGTAAAACCAGCCACTGCTCCTGTTGTTGCTGTGCAG
Seq C2 exon
ATGTTCACACGGAAGCCGTGCAAGCAGCTTTGGCCAAGTACAAGGAGAGGAAGATGCCCATGCCTTCAAAGAGACGCTCCGCCCTTGTGCACTCCTCCGTTGAGACCTACACGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231:ENSMUST00000160048:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.864
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(51.1=100),PF051207=GvpG=FE(44.4=100),PF064646=DMAP_binding=PU(12.1=16.0)
A:
NA
C2:
PF064646=DMAP_binding=PD(0.1=0.0),PF051207=GvpG=PD(14.8=19.5),PF064646=DMAP_binding=PD(84.8=68.3)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types