HsaINT0048103 @ hg19
Intron Retention
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47910513-47917020:+
Coord C1 exon
chr21:47910513-47910632
Coord A exon
chr21:47910633-47916900
Coord C2 exon
chr21:47916901-47917020
Length
6268 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CTGCTGTCCTTCCTGTGTAGATG
3' ss Score
10.43
Exon sequences
Seq C1 exon
GAATAGACCCATCTCTGCAAGCAGAGAATAGAATTCCTGGGCCCTCACAAACCACGGCCGCTGCACCCAAGCAGCAGAAGTCTCGGCCCACCGCCTCGAGGGATGAGCGCTTCCGGTCAG
Seq A exon
GTAGGGTCACAGCCTAGGCAGTGGGGAAGGTGGACGGGCCTGGAGCCCTTGGACTCTTGCCATGAAGTCTTCCAGTTATTTTTCCTTTGCCACAATATCTGCCAAAGAAATTATTTTCACATAAGCAGTAATGTACATCATCATATTTTTTTCAAGAAAAACATTTAACCTTCACGTAACCACAGTCTGTTTTAATGTATGGTGTAGCTTTAGTGGCACTTTCTTAGGGGATGCCTACAAAACTCTCTAGAGAAGTCTTCTTCTCACTCTTACTAGAATAATTTCTTTAAAACTTTTGTACACTTTTTACTTTGAAGTTGATACTAATAATTTTTGTGCTTTATGGAGCAGCTTTACTGCTAGGTGCAGGTGTTTTAGTATTTCTTTTTCTAATTTTGGAGATTTCCTTCCAATTAGATTTCTGCCACTCTGTTTGGCAGTGCTTTTATGAATATTTAAATTTGTCTCTGATGTTTTACTTGAATCAATAGAATGGCCATTGAAAAAAATTCACATTTTCTATTATAGTTTATATATTAATAACTTGAGCACGTTATCTATTTAATATTTTCACCACTGTGTGGTTGTATATTTTCTTCACATTTAAGCTCTTTTGACAGGCCTTTTTCAGAAAAAATTTTAATAGGGATAATGGTTGTTTTAAGAATACTGAAAACAAAGATTAAGATTTTAAATGTTTTTTCAACAGGGAGTGTAAAGAAATAGTCTAAGAAATATTCGAACAGATAATGTCTTACCAATTTGATACACATTTATAAAAAACTTTATCATGTGGCAAACAGCTTCTTCTCTGATTGTATAAATAATATATGCTTAGTGTTAAATATATAAAAAATATTATACCAAATTTAAGGACAAAGTTAAAAATCACCTGATACCCCTGAATCCTGAGATGGCCGCCCTCAGCATTTCACTGAGCACTGTTGTCCTCATGCCTGGATGCAGATGCACGCACACATGTGTACTTTCCATGAGAGTGGTCCTAGAAAAGGTCTCCTCCTTTCTGCCGCTCCTTATTTTCTACATGTCCCAGCTCTTCTCCCCAACCCTGTTCCCTGCTCATGGAAGTGATGTTAATAAACTGGTTTCTGCCCTTGTGAAGTTTATACTAGGTGTATTCTTTATCTTTTGAATACAGGTCTTTTATCATAAATATGATTTGCCAATATTTTCTCTCAGGCTGTGATTTGTCTTTGTGTTTCTTTAAAGTATCTTTTGAAGAGCAGAAGTTTTTAATCCTGATGAAGTCTAAGTTATCATTTTTTTAAATTGATAGTGCTTTTGTTCTTGTGTTTAAGATATCTTTGCCTAACCCAAGATTACAAAGATTCTCTCTTGTGTTTTCTTGTACAAGTTTTGTAGTTTTAGGTTTTTTAGTGCCATTTTAGTGCCCTTAAGTTTGTGATCTTTTTTTTTAGTTAATTTTAGTGTAAGTACAAGGTATGAATCAAAAGTTTACTTTTTTGCATGGAGGTAGTCAGCTGTTCCTGGGCCATTCCTTAAGCCTATGCTTTCTCCAGAGAATTCCCTTTGCACTTTTTTCTAAAAGCAGTTGCACATAAATGCGCGCATCTATTTCTGGACTCTCTGTTCTGTTCTATTGATCTATTCGTCTGTCTTTATGGCAAAACAGTGTTCTCTTGATGATCATACCTTAATAATAAGTGTTAAAATCAGTAGTGTTAGTCCTTCAACTTTGTTTCTTATCTGTGTTCTGTTGTATCTAATGTGTCTTTTTTCCTTCTTGCACCTTTAAGATTTTTCTCTTTATCACTGTTCTGTGGGCTCGATTATATCCTCTCTGAAATTCCTATATTGAAGCCCTAACCCCGGTGGGATGCTATTTGGAGTTTGGTCCTTTGGGAGGTAATTAGGTTTAGATGAGATCATGAGGGTGGGGCCCTCACGGTGGGATCGGTGCCCTTATAAGAAGAGGCATTGGCCAGGCGTGGTTGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAAGCAGGCGGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAAATTAGTCAGGTGTGATGACACATGCCCATAGTCCTAGGTATTCTGGAGACTGAGGCATGAGAATCGCTTGAACCGGTAGGTGGAGGTTGCAGTGAGCCAATATTGCCCCACTGCACTCCAGCCTGAGTGAGACTCTGTCTCAAAAAAAAAAGGAAGAAAAAAAAAAGAGGCACTAGAGCTTGCTGGCCCCCGCCCTGCCCCATCAACCTATGAGTACAATGGTTAGAAGGCAGATGTCTGTAAGCCAGGAAGAGAGCCCTCACCGGACACCAACCATGAGGCACCTTGATCTTGGACATACAGTCTCCAGTAAGAAAAATTTGTGTTGTTTAAGCCACTTAGTTTATGCTGTTTTGTTATGGCAACTGAGCAGACTAAGATGCTGGTGTTGAGTGATTTGATTATGATGCACGTGGGCTGGTTTTGTTTCTTGTGCTTGGGGTTTGTTGAGTATTTTTGGATCTGTTGATATACCCTATCAGGTTGATATTATCTATATTTTTAGTTCTAGGTTGTTTTTAATCTATACTTATTTTCCTTTTTTTCTAAGACAGCAATAATGTTTAGGGGAATCACAGTAACTTCCAAATCCATCACAAGGGTCTCAGTTTGTTTCTTGCTCTCTTTTCGTGAGTGCCTTTTTCCATGAGTGTTTTCAGTTAAGTCCTTGTGTGGAAATGCTTTTCGAACCTTGTATGTCTGATAATATTTTTATTAAATATTCATATTTAAATGATAATTTGGCTGGATATAAAATTCTAGGTTTAACACTTTTTGTCTTCAAAACTATTGCTTTTTTGTGCCTGGTGTTACTACTGAGTATTGTCAGTCTGTTTCTTGATCTTTCAAGGTGATTTACCTTTTTCTCTGGAAGCTTTTAGAATTGTTCTGTGTCTTTGATATCCATGAATTTCCTTTATCATATGTCTAGGTGTGAATTCTTCACCTTTCCTGAGTAGGAAAAGGTTTAACCTGGCCCTACAAGCCATTTAAATGTGAGATTTTTAAATGTTTTCAGACATTTGTTGGGGAAAATTGAAGCGTCTACAAAACTGGCCATCATTGTATTATAGCTCCCCTGGACCCATAGTCGAGCTCCAGAAATTCTGGGCCATCCATGCCCTGCCTTGGATTAATCTATACTCTACCTGCTTCCTCCCTTCCCATATGGTTTCATAGCAAATCTCGGATATGTTATTTCATTTAGATGTCATAATATTCTCGATCTCTGTCATTTTGATGTCGTAATAGTCTTGGTTTCTGTATCTGAAAAGATTGTATTTCTAAAAGATAATGCCATTTTCACAAAGTAATTAACAATAAATACTTCCTTAATAGCAAATATTCAGCCAATGTTCATATGGCTTTTGCTCGTATGGCTTCTAAGGAACAAGTTTATTTGGACCCAGGATTCAAATAAGAGCTACACATTGCAGTTGGTTGGTAAGTGTTTTCAGCCTCTATGAACCTTAGTTTGTAGGAGAAGCTGAGCTGTGTTTGTCTGATGGTTCCTCTTGGTGTCTCTGACATGCTTTTTAGGTCACTAGGTTTGATGAAAGTCAGGTTACAACGTTCAGCTGTTTACAAGACTGTCATGGGTGGCCCTGTGTTCCTCCACCAAGAGGCCTGTTGGGCCTGACTCTTGGCTGTTCACTGTGGTGCTTGAAAACCAGTGATTTTTCTCAGTTCTTAGATTGATTTCCTTTGGGCTGCAAAATGGTGAAATTTAGATTCTGACATTCCTTCTTCACTCAAAGGCCAGAATATTTCCGTAAAGAGAAACTTCTGTTATTTACAACTTGGTACAGGAAAGAAAGTCAAGATGAATATTTAATTCTTTCCATTTATTTACTAGTTTTCAGAACAATAGGTTGAGTCACTGGCCTCCTCCAATGGCAACCAATTGATTGCGTTTCCTCTTTTCCTTTTTCTTCTTTTCTTCTGTCAGTATCATATTTGATGTTTCAGTCCATTTTAGTATTTATTCTTACCGATATTCAGATTGTCCCATTCTTCGCCATTGGGAATCTCTTCAAATTGGCTCGAGTTGTTTGACCATTTCCTGGTTGGCTGTTAGGATAAGAAGTTCTAGGTTCATCCTGGGCATTTCTCCCCTGCTCCAGAATCTGCCATTTCTAAGGGTTTTTTTTAAGTGAGGATGGTGTTTCAAGACCACAGTCTGGGCACTAGGATGCTGATTGCTATTGGGCTGATTGTTGTTTGTAGACATTTTCACTGTACAGAGGTAAGACAGACTTTTAAAAGACAGGATACCACATTTGTTTGTAGTGACATAATCTATTCAGATTCAGAACTGCAGGGTCTGTACTTCATCTCTCTCTCTCCCTCCCTCCCTTCCCTCCATCCCTCCCTCTTTCTCTTTCGCTTTTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTTTGAGATGGAGTTTCACTCTTCTTTCCCAGGCTGGAGTGCAATGGCGTGATCTCGGCTCACCACAATCTCTGCCTCCCGGGTTCAAACGATTTTCCTGCCTCAGCCTCTCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCGGCTAATTTTGTGTTTTTAGTAGAGACAGGGTTTCTCCATGTTGACCAGGCTGGTCTGGAACTCCCGACCTCAGGGGATCCGCTCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCCATCCTCTCTCTCTCTTTCTTTTCTTCCTTCCTTCCCTTTCTTTCCTTCTTTTTCTCTTTTTCTTTCTTGGGTTCTCACTCTGTCACCCAGGCTGGAGGCAGTGGTACAGGCATAGCTTACTGCACCTTGGAACTCCTGGGCTCAAGTGATCCTCCAGCTTCAGCTTCCTGAGTAGCTGGGACCACAGGCGCATGCCACTGCACCTGCCTAATTAAACAAAAAAAATTGGGCCAGGTGCGGTGGCTTACACCTATAATCCCAGCACTTACAGAGGCCAAGGCGGGCGGATCACCATGTCAGGAGTTCAAGACCAGCTTGGCCAACATAGTGAAACCCCATCTGTACTAAAAATATAAAAATTAGCCGGGCGTGGTGGGGGGTGCCTGTAATCCCAGCTCCTCGGGAGGCTGAGGCAGGAGAATTGTCTGAACCCGGGAGGCGGAGATTGCAGTGAGCTGAGATCACGCCATTGCATTCTAGCCTGGCGACAGATCGAGACTCCATCTCAAAAAAAAAAATTTTTTTTTCAGAAATGTGGTCTTGCTGTGGTGCACAGGCTGGTCCTGGCCTCAAACGATCCTCCTGCCTCAGCCTCCTAGAGCGCTGGGATTACAGGCATGAGCCACTGTGTCCAGCCTACCTCTTTCATCTACATTTGTATCTCCTCTCCCTCATGAGTGTCCAAGCTCTAGCTATGGTAGAATCAGACTATTAAGTGCTTTTCATTTGCCATATCCCACAGGACTCACGAAGAATCTATATGACAATGCCTTCACTGCTATCAACAATATGAGAGAGTTTAAAAGTTTTTGTTCAGTTATTTTTGTCCTTATTAGATATTTCTGGAAGTAGAGGTTGACCAGTCTAACTTCAGTGTTTTAAAGTCAGCTGCAATAGTTTAAACCAGGGGTGTCCAATCTTTTGGCTACCTTGGGCCACGTTGGAAGAAGAATAATTATCCTGGGCCACACATAAAATACACTAACACTAACGATAGCTGATAAGCTAAAAAAAATTGCAAAAAAATCTCATAATGTTTTAAGAAATTTTACGAATTTGTATTAGGCTGCATTCAAAGCCCTCCTGAGCCATATGAGGCCCATGGGCCACGGGTTGAACAAGCATGGTTTAAACCAACAACTAGATACACATTTAGGCTCATTTGTTTCACTTTATTTTCAATTTTGGGGATTTCTCTTTTATTCAGTTTTGATTTATAACTAAGGAAATATTTACAAGATTCCAAAGTTAGATCTACAAACAAAGAAATATTTAAAGAAATCTAGGACCAACATGTGAGGATAGACAGAGAGAGCTTCTATTCCTTTTACCCCCACTGAAAACAAACAAAAACATGAAACTTAATTTGTTACTTTATAAACAGTCTTGTAAAAAGTATTTTTACTGCTGTCCTTCCTGTGTAG
Seq C2 exon
ATGTCCACACTGAAGCCGTGCAAGCAGCTTTGGCCAAATACAAAGAGAGGAAGATGCCTATGCCTTCGAAGAGACGTTCTGTCCTTGTGCATTCGTCTGTGGAAACCTACACCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-DIP2A:NM_001146116:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.913 A=NA C2=0.978
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(34.8=100),PF051207=GvpG=PD(11.5=14.6)
A:
NA
C2:
PF064646=DMAP_binding=PD(0.1=0.0),PF064646=DMAP_binding=PD(84.8=68.3)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)