MmuINT0049553 @ mm9
Intron Retention
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75782212-75784351:-
Coord C1 exon
chr10:75784235-75784351
Coord A exon
chr10:75782332-75784234
Coord C2 exon
chr10:75782212-75782331
Length
1903 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTCCTGTTGTTGCTGTGCAGATG
3' ss Score
9
Exon sequences
Seq C1 exon
GAGTAGACCCATGTCTGCAGACAGAGAATAGAATTCCCGGGCCCTTGCTGACGGCAGCTACCGCTAAACCACAGAAGTCTCGGGCTACCAACTCCAGGGATGAGCGCTTCCGGTCAG
Seq A exon
GTAGGTTCCTAGCTCTGGAAGCGCAGGAGCAGGAGGTGGGTAGCAGCAGGCAGGACACTCGTGTTCTGACTACCGAGGCTTCTGGTTGGGTTTTCTCTGCTAGAATATCCACCAAAGAAGTCGTTATTTTTTACTTGATATCATCGTATTGTTCAAGAAAGCAGAATCTTCAGATAGGTTATTGTTTATTTGTTTGTTTTTCAAGACAGGGTTTCTCTGTGTAACCCTGAATGTCCTGGAACTTGAGTTGTAACCCATGCTGACCTCGAACTTACAAAGATCTGCCTGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGTGTGCACTACTAGGCACAGCTGAGATAGTTTATTTTGATGTCTCACTTTTCTCACATATTGCTTGCATGCAAAGTTTGTATGTTAAATTCATGTGTGCATGTGTGTGTGCATGTGTTTGCATGTGTGTATATGCATGTGTGCATGTGTTTGCATATGTGTGCATTTATGCATGTGAAGATGCCATCTTTTTCTTTTCCTCTTTTTCTTTTTTAGCTTTGAACTTGCCAAGTAGGCTAGCCTGACTGGCCAGTGAGCCCAGTGCTCTTCTTCTTGCTACCCCTCTAGCATTGGGATTATACGCATTCCCAGGTAGTTTTAAAATAGGAGTTCTAGATCCTTATGCTTGCAGTGAAAGCCCTTTACTGACTAAGCCATCTCTCTAGTCTCTGGAGAACCCTTCTCCTCCTGCCTAACAGGACAGCACACTTACTGTTTCTATCCCCTTCTCCACCAGAAACTGGGAGAACTCAGGGATTTCCGTGTACATGGAAGTAGCTATATGATTGGTATAATTTAAATTTTCTGTTAATTAAAATTTTCCACTATTTGGTAATACTTTTTATAAATATTTAAATATATTTAAATTTACTTTGATTTTGGTTTACTTTTAAAAACAGTTTTGCTCTGTGTGTGTGTATGCATGTATGCATGTATGCCATGAATCACACGTGGAGGTCAGAGACAGCTTGCAGGTTTTTCTTCTACTTTGTAGGTTCTAGGGATCTTGGAGGTCATAAGTACCTTTACTTGCTGATCTGACTTGCCCCCTGCCCTCCCCCTCCCTCTTTATTTTAAGACAAGTTCCCATTCTCATGTAGCTCAAGCTGGCCTGGAACTTACTATGTAGTGGAGTACAGCCTTTAACTTCTGATCTTCTCATTTCCATCTCGGGGACTAACAGCCTGGTCACGTACCAAAATGCCTGGTTTATGTGATGCCAGGGTCGGAAGCCAGGGCTTCATACATGCTGCACAAGCATCCTACCAGCTGAGCTGTGTGTATTCAGGTGTGCATGCCTTTGTATGTATGTGGAGGCCTGGTGTGGATGTTGGATGTCTTCTGTAATCACAATGCACTTACTTTTTAAAGATAATATGTGAATTGATTGATGCACATGTTCCATAAACATTGAGACCTCCTCAGTGGGAACCTCCTGAGGACTGAGATGCTCACACTCAGTTCAGGGCCATTGCTTTCAAAATGTGTCTACTTGTTTTGTTCTGCTTGCTTGCTGCTTGCTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCCTTGTGAACCTTCTGATTGACCTACTGACTAGCTAGGCCACCTAGCCAGTGAACCTCTGGGAGTCCTTAGCCCTTTTTTTATTTTTTATTTTATTTTATTTTATTTTATTTTATTTTTTAACTTATAACTAAAAGTATCTGTCAAGTTCAAAAGTTGAGTCCTCAGGCAAAGTAATATTTAGAGGAAGTCCAAGGCATAGGGGTAAGTGGGCAGGCAGGTGATTTTTTTTTCCCCTGCTCGGAGTAAGCCAACAGAAAACCAGATTGTAACCACTGTAGTAAAACCAGCCACTGCTCCTGTTGTTGCTGTGCAG
Seq C2 exon
ATGTTCACACGGAAGCCGTGCAAGCAGCTTTGGCCAAGTACAAGGAGAGGAAGATGCCCATGCCTTCAAAGAGACGCTCCGCCCTTGTGCACTCCTCCGTTGAGACCTACACGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-Dip2a:NM_001081419:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=NA C2=0.854
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=FE(34.2=100),PF051207=GvpG=PD(0.1=0.0)
A:
NA
C2:
PF064646=DMAP_binding=PD(0.1=0.0),PF051207=GvpG=PD(14.8=19.5),PF064646=DMAP_binding=PD(84.8=68.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGACAGAGAATAGAATTCCCG
R:
CTGGAGGCGTGTAGGTCTCAA
Band lengths:
222-2125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: