BtaINT0049288 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147965491-147966090:+
Coord C1 exon
chr1:147965491-147965600
Coord A exon
chr1:147965601-147965959
Coord C2 exon
chr1:147965960-147966090
Length
359 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GTGGGCTTTTACTCCTTCAGATG
3' ss Score
8.61
Exon sequences
Seq C1 exon
ATGACATACCCAAGAAGAAGGTGGCCAGCGTCTTCAGGCCCCCGTCCCCGGATGTGCTCGCGTACCTGGACTTCAGCGTGTCAACGACCGGGATCCTGGCGGGTGTGAAG
Seq A exon
GTGGGTCCTCTGGCTGGAGCCCCTGTCCGCCTCGTCCTGACCCAGAGAGTGCTGATGCGGGTCTGTGCAGGCCCTGCTTCCTCCCAGGCTGGAAGCAGCAGTTTTGCTCCTTAAAGCTTGTGTTAAATATCAGTAAACCCCAAAATTAGGTTAGCCTGAAGAGTAATGCATGTCTTGATGTTTTATGGTGATACCTAAACTTTCTGATTCATGACTCTGGCCTCGACAACCAGCTGGCTTGGATGAGTCTGTCACCAAAAGCTCTGTTAAAATTCTTTATCGCCCTGATGTCTCGCCTAGAAGGTTTTTAGTGTTCATTCCTGGGGGTTTTTGGTGTATGTGGGCTTTTACTCCTTCAG
Seq C2 exon
ATGTCGCATGCGGCCACCAGCGCCCTGTGCCGCTCCATCAAGCTGCAGTGTGAGCTGTACCCCTCCAGGCAGATCGCCATCTGCCTCGACCCCTACTGTGGCCTCGGCTTCGCCCTGTGGTGTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495:ENSBTAT00000061028:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATACCCAAGAAGAAGGTGGC
R:
CTGCACAGACACCACAGGG
Band lengths:
238-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development