DreINT0057172 @ danRer10
Intron Retention
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:596907-597234:-
Coord C1 exon
chr9:597125-597234
Coord A exon
chr9:597038-597124
Coord C2 exon
chr9:596907-597037
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
AAGCACTCTGTGTATCACAGATG
3' ss Score
5.14
Exon sequences
Seq C1 exon
ATGATCTGCCCAGGAAGAGGCTTCCTCAGATCTACAAGCCTCCGTCCCCAGAGATGCTGGCCTACCTGGACTTCAGTGTGTCCACCACAGGGATCCTCGCCGGGGTGAAG
Seq A exon
GTGCGTCTAGAGTCTGTTGACCAATACAGACTGCTTTAAGGTGTGTTAGTGTCTGTGTGTGTTATTAAAGCACTCTGTGTATCACAG
Seq C2 exon
ATGTCCCACGCTGCCACCAGTGCCTTGTGTCGCTCCATTAAACTGCAGTGTGAGCTGTACCCGTCCCGACAGATCGCCATCTGCCTCGACCCGTACTGCGGCCTGGGCTTCGCTCTCTGGTGTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058:ENSDART00000115030:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGACTTCAGTGTGTCCA
R:
CAGAGACACCAGAGAGCGAAG
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]