HsaINT0048102 @ hg19
Intron Retention
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47975895-47976982:+
Coord C1 exon
chr21:47975895-47976004
Coord A exon
chr21:47976005-47976851
Coord C2 exon
chr21:47976852-47976982
Length
847 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AACTTTATTTTACTCTTAAGATG
3' ss Score
4.86
Exon sequences
Seq C1 exon
ATGACATCCCAAAAAAGAAGATAGCAAGCGTTTTCAGGCCCCCCTCCCCCGATGTCCTCGCATACTTGGACTTCAGCGTGTCAACCACTGGGATATTAGCGGGAGTGAAG
Seq A exon
GTAGGTCCTCTGAAATCTTGTTTGCTTCAGCCCCTAGAAATCAGGAGGAGTGGACAGAAAGGATGTCAGATGCAGATTTAAACTGACAGGTCCTTCTTATGCAAAGCACAAAGCAACAATTTTGCTTCTTAAGATTTGTGTTAAATACCAATAAATGCTAAGATGTGATTAGCCTGAGAGTAATGCGTTTTCTGATGCATTATGGTTATGTCTAAACTTTCTGATTTATGACTGTCTAGCTTACAGGAACTGGTGGCTTTGAAGAATCTCTTACCTTGCTGGGAGTCAATAGCTCAATTAAAATTTTTCAGGCGGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCCGAGGCGGGTGGATCACAAGATCAAGAGATGGAGACCATCCTGGCCAACGTGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCTGGGCATGGTGGCAGGTGCCTCTAATCCCAGATACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGTGCCATTGCACTCCAGCCTGGGCGACAGAGCAAGACTCTGCCTCAAAAAAAAAAAAAAGAAAAAAATTTTAAAAATTCATTACCCTGAAATTTTGTTTCAAAGATTTTTAGTGTACCATTTCTTGGGTATTATTTAGGTTATATGGGGATTTGAGCCAACCGTCTTTTAAGGAAATAAATATGATGTTTGGTAGTTCGGAGCTATGGTCTAGCCATGTGAACAGCGGACACTGCCATCCACCCTCTCCCCTCCTGAATTTCATTTCACTTTTTTTTTTTGAACTTTATTTTACTCTTAAG
Seq C2 exon
ATGTCGCACGCGGCCACAAGCGCCTTATGCCGCTCCATAAAGCTGCAGTGTGAGCTGTACCCCTCGCGGCAGATCGCCATCTGCCTCGACCCCTACTGTGGCCTTGGTTTTGCCCTGTGGTGTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-DIP2A:NM_001146116:29
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(20.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGAAGATAGCAAGCGTTTTCA
R:
CTGCACAGACACCACAGGG
Band lengths:
230-1077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)