GgaINT0051034 @ galGal3
Intron Retention
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6914561-6915291:-
Coord C1 exon
chr7:6915182-6915291
Coord A exon
chr7:6914692-6915181
Coord C2 exon
chr7:6914561-6914691
Length
490 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AGTCTGATTTCCTCTTACAGATG
3' ss Score
10
Exon sequences
Seq C1 exon
ATGATATGCCTAAAAAGAAACTGGCTAATATTTTCAGACCTACATCTCCAGATATGTTGGCATATTTGGACTTCAGCGTGTCAACCACTGGTATATTAGCAGGAGTAAAG
Seq A exon
GTAAAGTACCTGAAGGGAGATAGCTATTTTAATTTCCTTACACATTGGCACATTTTGCATTTATTTTTCCTGACAGAGAATAAATACAAAAATATGAGTGAAACATTTTAGTGGTCAAAAGACTTATTTTAAAATTTGCATGACATCAGCATTTCTTGATGCATTTTGGAAACATTCAGTCTTATCTGGTTGTACATGAGGAGTCCTTGAGGAGACTAAAGGGAGGGTGTTTGCTCTGAAGTTCACAAATGTTTTCATTTGTGTTTTATCACAGAGATGGTAGATGTTATTTGACACCATTTGGCTTCATGGCAAATGTCACTTACCAACAGCTTGAAAATTTGGATTTGTATCTCTTTCCTATTTGAAAGACACATTAAAAAATACCTTCCTGTTGCCACATCCTCTACAGCAAACAGTTCTGTCAGTTATTAAACATGATGCTTTTTTATAAGAAAATCCTAAAAGAGAGTCTGATTTCCTCTTACAG
Seq C2 exon
ATGTCACATGCAGCTACAAGTGCCTTATGTCGCTCTATAAAGCTACAGTGTGAGCTGTACCCTTCACGTCAGATTGCTATCTGCCTTGACCCCTACTGCGGTCTGGGGTTTGCACTGTGGTGCTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228:ENSGALT00000010067:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATATGCCTAAAAAGAAACTGGCT
R:
CACCACAGTGCAAACCCCAG
Band lengths:
231-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]