BtaINT0049305 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29403385-29404228:-
Coord C1 exon
chr5:29404105-29404228
Coord A exon
chr5:29403495-29404104
Coord C2 exon
chr5:29403385-29403494
Length
610 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
TTATTTTGGGTTTGGTTTAGGTT
3' ss Score
9.12
Exon sequences
Seq C1 exon
GATGCTGGGGGGCAGCAGATTGGCTTCTTGCTAGGAAGCTGTGGTATTGCCTTAGCTCTTACCAGTGAGGTTTGTCTAAAGGGATTGCCAAAAACTCAGAATGGAGAAATCGTACAATTTAAAG
Seq A exon
GTTGGTAATATTTGCACCTGATTTATCAGTTAAAAACTAATGCTGAGTGCTTTAATTAGTGTTTTAATTTAATAGTAGCTAAGTATTTAACATATTTTCTTATTTAATTCTCACAGTCTTATGAAGTAGGTACCATTATTATCCCCATTTTACAGGTGAGGAAACTGAGACACAGAGAGGTTAAGTAACTTGCCCAAAGTCACAGCTAATATATGGCAGAGCAGCGATTTGAACCCAAATCTGTCTGATTCCACAGCCCACACTCTTAACCTTTATGCTGATGGTTGGAAAAGCTACCACTCTGTTCACTAAAACTAAATGCTACATGTAGAGACAGAGGATAGACCACTAACCTCAGTGGACTTCCACTGCCAAATGGACCTCCCAGTTGTTGAGGTAATGTCAAGGCCTGGTGTTAGCATATGGAACGGTTGTGCTTTTGAAAGAAGGTATAAATGCCTGATGATTTATCACTAAACACTAAATGAGGTATTTTCTTGGTTATAAAATGATCTTGATTTGATCTCTTGATATTTAAAATGGCCAATTCATTGTGAATTCCTTTTCTGATGGCTTAGGCAATTCAATTTTTATTTTGGGTTTGGTTTAG
Seq C2 exon
GTTGGCCCCGGCTCAAATGGGTTGTAACAGATTCCAAGTACCTTTCAAAGCCACCTAAGGACTGGCAGCCCCTCATCTCACCTGCTAGCACAGAGCCAGCATACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246:ENSBTAT00000006902:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGCAGATTGGCTTCTT
R:
AATGTATGCTGGCTCTGTGCT
Band lengths:
222-832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]