HsaINT0048114 @ hg19
Intron Retention
Gene
ENSG00000066084 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:29284]
Coordinates
chr12:51079616-51080465:+
Coord C1 exon
chr12:51079616-51079739
Coord A exon
chr12:51079740-51080355
Coord C2 exon
chr12:51080356-51080465
Length
616 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TCACTTTGGGTTTGATTTAGGTT
3' ss Score
9.56
Exon sequences
Seq C1 exon
GATGCTGGAGGTCAGCAGATTGGCTTCTTGCTAGGAAGCTGTGGTATTGCCTTAGCTCTTACCAGTGAAGTTTGTCTAAAAGGACTGCCAAAAACCCAGAATGGAGAAATTGTACAGTTTAAAG
Seq A exon
GTTAGTAACATTGTACCTGAATTATCAGTTAAAAGTTAAAACTGAGTGCTTTAATTAGCTTTTTAATTTAGTAATAGCTAGGTACTTTACATATATGTTCTATTTAATTCTCATAGTCTTATGAAGTAGGTACCATTATTATCCCCATTTTACAAGTGAGGAAACTGAGAAACAGAGAGGTTAAGTAACTTGCCCAAAGTCACAGCTAATAAATGGCAGAGCAGCAATTTGAACCCAAATCTGTCTGATTCCACAGCCCACACCCTTAACCTTTATGCCGATGGTTGGAAAAAGCTACCACTCTGTACATTAAAGCTAAATGCTACATGTAGAGACAGAGGATAGACCACTAACCTCAGTGGACTTCCACTGCCAAACGGACCTCCCAGTTGTTGAGGTAATGTCAAGGCCTGGAATTAGCATGTGGAACGATTGTACTTTTGAAAGAAGGTATAATTGTCTGGTGATTTGCCACTAAAAACTAATAAAAACTAAGTATTTTATTGATTATAAAATGATCTTAATTTGGTCTCTTGATATTTAAAATGACCAGTTCAGTGTGAATTCATTCCCTGATGGCTTAGGCAATTCAATTTTCACTTTGGGTTTGATTTAG
Seq C2 exon
GTTGGCCCCGGCTCAAATGGGTTGTAACAGATTCCAAGTACCTTTCAAAGCCACCGAAAGACTGGCAGCCACACATCTCACCTGCTGGGACAGAACCGGCATACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084-DIP2B:NM_173602:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(27.2=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGTCAGCAGATTGGC
R:
CTCAATGTATGCCGGTTCTGTCC
Band lengths:
230-846
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)