HsaINT0048114 @ hg38
Intron Retention
Gene
ENSG00000066084 | DIP2B
Description
disco interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr12:50685886-50686682:+
Coord C1 exon
chr12:50685886-50685956
Coord A exon
chr12:50685957-50686572
Coord C2 exon
chr12:50686573-50686682
Length
616 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TCACTTTGGGTTTGATTTAGGTT
3' ss Score
9.56
Exon sequences
Seq C1 exon
AGCTCTTACCAGTGAAGTTTGTCTAAAAGGACTGCCAAAAACCCAGAATGGAGAAATTGTACAGTTTAAAG
Seq A exon
GTTAGTAACATTGTACCTGAATTATCAGTTAAAAGTTAAAACTGAGTGCTTTAATTAGCTTTTTAATTTAGTAATAGCTAGGTACTTTACATATATGTTCTATTTAATTCTCATAGTCTTATGAAGTAGGTACCATTATTATCCCCATTTTACAAGTGAGGAAACTGAGAAACAGAGAGGTTAAGTAACTTGCCCAAAGTCACAGCTAATAAATGGCAGAGCAGCAATTTGAACCCAAATCTGTCTGATTCCACAGCCCACACCCTTAACCTTTATGCCGATGGTTGGAAAAAGCTACCACTCTGTACATTAAAGCTAAATGCTACATGTAGAGACAGAGGATAGACCACTAACCTCAGTGGACTTCCACTGCCAAACGGACCTCCCAGTTGTTGAGGTAATGTCAAGGCCTGGAATTAGCATGTGGAACGATTGTACTTTTGAAAGAAGGTATAATTGTCTGGTGATTTGCCACTAAAAACTAATAAAAACTAAGTATTTTATTGATTATAAAATGATCTTAATTTGGTCTCTTGATATTTAAAATGACCAGTTCAGTGTGAATTCATTCCCTGATGGCTTAGGCAATTCAATTTTCACTTTGGGTTTGATTTAG
Seq C2 exon
GTTGGCCCCGGCTCAAATGGGTTGTAACAGATTCCAAGTACCTTTCAAAGCCACCGAAAGACTGGCAGCCACACATCTCACCTGCTGGGACAGAACCGGCATACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084:ENST00000546732:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0050123=AMP-binding=FE(16.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development