GgaINT0001064 @ galGal3
Intron Retention
Gene
ENSGALG00000006139 | DIP2B
Description
NA
Coordinates
chrE22C19W28_E50C23:146711-147453:-
Coord C1 exon
chrE22C19W28_E50C23:147330-147453
Coord A exon
chrE22C19W28_E50C23:146821-147329
Coord C2 exon
chrE22C19W28_E50C23:146711-146820
Length
509 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
CACTTTAATTTTGGCTCTAGGTT
3' ss Score
8.47
Exon sequences
Seq C1 exon
GATGCTGGTGGTCAGCAGATTGGTTTTCTTCTGGGAAGCTGTGGTATTGCTTTGGCCCTCACCACTGAAGTCTGTCTGAAAGGGCTTCCAAAAACCCAAAATGGAGAAATTGTGCAGTTTAAAG
Seq A exon
GTTAGATCAGTTATGTAGTCACTTTTGATTGTACTTTTGCCATAACAGAACTGTTTGAAATTAGTTGTCAGAAGTCTGCAGAATGCATTTTTCAGGGCTTAAAGTGAACAACTTTCCCAACAGCATCTCTTACTGTAGTGGGCTTTGTATGTACGGCGTAGATTGATCTGTATATCTAACAAAACGACTGTGTTGATCTGGGAGTACAAGCTATGGTTTGTCCTCATATCCCTTCGGTGACGTTTGGCAGATTCAAAAGCAGTTTTATTAATGATGGAACAATCTATATTTAGGAATACTGCAGGGATCTTTCCTGAGTAGAGGAAGTATCTTGCTGCCCACTGAACTCCCTGATGAGAAATGCCTTCTGGCTACCAGCTTGGATTGGATTGTTACTGTGCTTGCATAACTAAACTTGGATAAATGATGTGTTTTTGTGTATTCTTGCACAATATAAATCTGTCACTAAGTAAACTGCTATTAATGCTCCACTTTAATTTTGGCTCTAG
Seq C2 exon
GTTGGCCTAGATTGAAATGGGTTGTGACAGATTCAAAATACCTCTCCAAATCTCCTAAGGACTGGCAGCCCAACATCTCAGCTGCAGGAACTGAGCCAGCATATATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139:ENSGALT00000009909:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTCAGCAGATTGGTTT
R:
ATATGCTGGCTCAGTTCCTGC
Band lengths:
223-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]