BtaINT0049329 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29357947-29359685:-
Coord C1 exon
chr5:29359628-29359685
Coord A exon
chr5:29358022-29359627
Coord C2 exon
chr5:29357947-29358021
Length
1606 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GTTTTCTCTTTGATTCTTAGATC
3' ss Score
9.12
Exon sequences
Seq C1 exon
GGTTCGTCTTGTGGAACGGGGTGCCCCCCAGAGTTTGCTCCTCTCAGAGTCTGGAAAG
Seq A exon
GTAATTTGTTGTGTTAACCATTGGGAAGGTGTGTGTCACCTGTGTGGAGAAGTAGTTTTAAAGAAACCTGAAGCCATATAATATACGTGTTAGTACCCAGGGCAAGACTGAATTGAATTGACATCTGGAGATAATTCAACAATTTTCACTTAGCCAATACTTTCAAATTCATATGGGTACATAAATAAGAAGAATACTAGATTTGAACTTTCTTAATTTTCATAGATTTTTATTTTTAAATCCTACTGACATATTATTTGACAAACCAACTGAATTCAATGTTCATTATACTCAAGGTGAATGAGCAGCACTAAGAGCCAGTTCTACCTTTATGAATATTACAAGTGGAAAGATAGGCTGACAGATGGGGGGTGTGGCTTAAGATCCAGGGAAGACATACACATACTTAAAGTTGAAAGAGAAATCAAAATGGGGAAGAGATTAAAGATATTTGAGAGTGATATCTTAGATGAGAATAAGGCTTTAAATTGTTCAGGGAGACATTTTGTTATTGCCTTAGTCCATTCAGGCTTCTCTAACAGAATATCATAGACCAGGCAGCTTATGAACAGCAGAAACTTCTCTCTCACATTTCTGGAGACTGGCAAGTCCAAGATCCAGGTGCCCACGGATTCTGATGAGGGATTTCTGGTTCTTAGATGGCTGTCCTATTGCTGTGTCCTCACATGGTGGAAGGGGCAGGGAAATCTCTGAGTCTTGTATATAAGGGTATGGATTGCATTCATGAGAGCAGACCCCTGACCTCCTCCCAAAGGCCCCACCTCCTAATGCCATCACTTTAGGGTCATATTTCAACATATAGGTTTCAGTCCATAACAGTTTTGAACAGTTTACTCACGTTGAGCAGATCAATCCATATAAACTATCAAGTTTCTCATCCTTTTGAAGAGAGAGTAATGATGGCTCAGCATCCCTTCTAATTCTGAAAGGCCAAGGAGAACATAGGGAAGAAAACAGTGGGCCCAGCCCCACCTGTGCAGTCGTGGCTCAGCCCCTTGGGGAAATCCCTGTTTCACTCCTCTGTTTAAACTCTTCCAAGTGGAGTTGGGTTGACCTTCTTGCCATCTTGCCAGCTCTTCCTCTGCCTCCACTGGCGGCGAGCACCTGAGGGACTTCAGAGCAGTTCCTGGCCCACACAAGCAGGAATGGCCTTCCACTTCCTTCCTTGAGGTCTTACATGTGTGAGCTTCTTGATGCTAGAAACCCAAGGAAAAGAGAGATTTAGGACAGAGGATGGGTGTCTGAAGAAGCCCCAAGCTATCCTCAGCCAGCACCTGCTGCTTCCTTCTCCCTCCGAGGGAGATGCGGGCACGTGACGTCTCTCCCCTCGCCTGCCGAGCCGCCACTGGTCTGCGGTTTCTCACCTTTGAGGAGATGGCAGACAGGTGGGTTCCCCAGTTTAGTTTTGAGGCAGAATCTTGTTATACATACTTCTGTCCCCTGAGGACGATCCTGTGAGTACCAGCTCAGCTCTGGCCCGTGTGCACTCCCTTACCTCACTGGAGGGAGGAAGTGGAAACTGCATTTATTAGAGGTCATGAAATCTGATGGAACTCAACTTTTGTGTTTTCTCTTTGATTCTTAG
Seq C2 exon
ATCCTACCTGGAGTGAAAGTAGTTATTGTTAATCCAGAGACCAAAGGGCCCGTTGGAGACTCTCACCTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246:ENSBTAT00000006902:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]