HsaINT0048139 @ hg19
Intron Retention
Gene
ENSG00000066084 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:29284]
Coordinates
chr12:51128856-51130893:+
Coord C1 exon
chr12:51128856-51128913
Coord A exon
chr12:51128914-51130818
Coord C2 exon
chr12:51130819-51130893
Length
1905 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
ATTTTCCCTTTGATTCTTAGATT
3' ss Score
8.6
Exon sequences
Seq C1 exon
GGTTCGTCTCGTGGAACGTGGCGCCCCTCAGAGTTTGCTTCTCTCAGAGTCTGGAAAG
Seq A exon
GTAATTTGTTCTGTTGACCATGGGGAAGGTGGGCTGTGTGGAGAAGTGGTTCAGTTTAAAGAAACCAGAAGCCATATAATATATTAGTGTCCAGGGCAAGCCTTAATTGAAATCTGGAGATAATTTCAGCTTGGCTAATACTTTCAAATTCATATGGGTACATAGATAAGAAGAATAGTAAATTTGAACTCTCTTAATTTCCATCGATTTTTAAAAATCCAACTGACATGTTATTCTTATTGACAGACCAGCAAAATGCAGTGCTCATTGTATGAAAGGTGGATAGAAGAGCTGGTTCTATGTTTTTTTTTCATGGTTTTTTTTGTTTTTTTGTTTTTTGTTTTTTGTTTTTTTTGAGATGGAGTCTCACTCTGCCACCCAGGCTAGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCAGATTCAAGGAGAACTTGCCTCAGCCTCCGAGTAGCCGGGGTTACAGGCACCTGCCCCCACGCCCAGCTAATTTTTGTGTTTTTAGTAAAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACATCAGGTGATCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTATGCCCGGCCCGGTTCTATCTTACAAACGTCACAAGGAGAAAGCTAGGAGAGGCCGAGATGGGAGTGTGGTTTAAGGTCAGGGAAGACACACATGCATTTAAAGTTGAAAGGAAAATAAAAATGGGGATGAGATTAAAGATATTTGAGAGTTAACATCTGTGGGAGTAAGATTTCTTAGATTAGAATGAGGCTATAAAACGTCAAAAGAGAGATTTAGTGAGAAGCAATTTACTAAGGATGATAGGAAACCCACATGCATTGTCAAGACAAGTGGGAATTTCTCTGCCCTTTGATGAGATAATGATGATACCTCAGAATCCTGTCTAGTAATTCTGAAGGGCAGTGAAAAAATTGTGGAGGGAAAAAAAGAATCCCTGCCAAACCTACTTGGTGGTGTATCACCCCATGGGGCGCTTACTCCAGTCTCACTTTCCGTTTGCATCTGCGAGCAGAGGGGGATTTGGCTGATTTTGTCACTGCCTTGTCACATCTTCACTTGCCTCAGCAGCCAAGCACACCTCACGAGCATTAGCCTGTGCCCACCCTGGACTAAGGGAACCGTCTCATCTCTTCCTTGAGGTTTTAGATGTTTGCACCCAGATAATTATTGAGGGCTTCTCAAGTAACCTCATACTTTAGAAACCCAAGATAAAAAGGGAGTTTGAAGGGGGCAGAATATGGGTAACCAGAGAGGCCCTTCTTTTGTTAGAATGGCTGAGCCATTCCCTCAGCCAGCGTATGTGTCTTCCTTTTCCTTCCTGAGGAAGATCCTAGGGTCAAGGATATCCTTCTGTCCTGCAAAGCTGCTGCTGTCCTCTGTCACTCTTCACATTCCTCCAACTCTAGCACCAGCTGGAGTCTGGAGTGGAGTGACTTAGGCTGTCCCTGCCTGCTGCCCTTTCTGTTTTAAAGGGTTTCACTGCCATCATTCCAGTGAATGAGAAAGAACATGAAAAGGGAAAGGTTATTCTACAAATTCTACTGTTAAGGTCCTGATCTGCAATTTCTCATCCCTTTGAAGAGATGGCAGACTGGCTCCCATTTTATTTTTGAGGCTGAGTTTTATTAGACCTTTCGTCTTCAATGAACTGAGGAAGGTTCAGTGAGAGCAAGACACAAGGTCTCTGCCATGATCCCCTCAGGGTAGCTGCTGTGATGCCGCTACAGCTGGCTCGCCATGTGTGCCTCTCTCACCTCTCCAGCAGGTAACTAACCGTGCGTTTCCTGGAGGTCATTAGATTTCACTGAACTCAATCTTTGTATTTTCCCTTTGATTCTTAG
Seq C2 exon
ATTTTACCTGGAGTGAAAGTGGTTATTGTTAATCCTGAGACCAAAGGGCCGGTTGGAGACTCTCACCTTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084-DIP2B:NM_173602:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)