DreINT0057215 @ danRer10
Intron Retention
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27435317-27437177:-
Coord C1 exon
chr23:27437120-27437177
Coord A exon
chr23:27435392-27437119
Coord C2 exon
chr23:27435317-27435391
Length
1728 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TCTTCTGTGCTTTACCTCAGATG
3' ss Score
9.57
Exon sequences
Seq C1 exon
AGTCAGGCTGGTGGAGAGAGGAGCTCCTCAGAGTCTGCCGCTGATGGAGTCTGGGACT
Seq A exon
GTAAGTTCTGCTCTGAGTTATCTTTAGTACTAGGCAGGTTAATTAAAATATGGTGTACTTGGAATGTAGTCTATTAGATTACTTTATGTAATCAAAAAACTAATACTTTTACTTTTTATTTTTGATTCTATAATGTTGTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAGGTAGGTAATATAAAAAGTAACAAATCATTGTTAATGTTATCTAAATATAGACATTTTTTTGTGTGGATATTTACATATAATATGTACATATAATAACACGTATAGCAAATAAAACACAATAAAAGCAGATTAATTGTAATGATTTACTAGTACCATTTTATATTTGAATTCAGAAAAATTGTTAGTCTACCAGTAGCTTTAAATGAAACTGCTCACAAACATAAAATTGTATTTTCATGTCCCTCACTCTACAACAAATCCTTTTAATTTAACAGTATTCAGAACAGAAAAAGGAATGAAAATAAGTATTTAAAAAAAAAATAAGTGGTGATTATTATTAAAAGGCCATGAAACACCCAAATGTTTTCATACCTCTAGTTTGAAAAAAGTCAGGAAAGTGGCTTTGATTAGATGGGAGTGTCAGGTGGCGAAAGAGGGATGGGTTTGCATGAAAAGGGGAGTTTCAGTAAATCACACAGATGGAAGGGAGAAAGACGATGATTTGGAGAGCAGGATTTACAGCGGATCTGAGAGCTGTATGGAAGTGTCAGGTTTTCAGTCTATAATATTGTAGTGATATTACTGCACACTCTGTAACAAAATTTTGACTAAGGTATGTCTTTAAAATCTGAAAGAGTTCTGCTGACGATATTAACTAAGTTTGCCATCTGGAGAAACTTAAGCAATGAGCTTTGATCACACACTTACCAAATCCGTAGAGACAAGACAAAAGAAACAAACTGGAACCACAAATTTTTTTTTAAAGAAGACGAGTGGCAAATCCGGATTCTACCATCTCCAGATGCGAAAAGTTCTTGAGTAAAAAATGTTCCTTGCAAACATATTTTTGTCGCATGTTAGCAGACCACTGTAATCCACACTTGTGGGTAAACACAAAAGCGGTGCTCTCATTGCGGGGAAATGGAAACAAAACCTTTGTTGTGGCACATTTATAAACGCAACACTGATGTTCCTCTTCCTAATGAAGGTGCATCTCATTCACAATAGAGCATGCTGATTGGTTCGAATCAAGTCTTTCTCATGAATTAATGAACAGATGTGCTGAAAACTCAATGATGTCGCTTTGTACCGGCCGGTACAGACAGACAGACAATCTCCACGCTGGAATTTACACAATGGATCTCATTGCCATGACGCAGCTTCAAAATTTCTTTTTGAACCGAAAAGAACAAATTAGCTCAAAATAACGTAAAAACAACCAATTTACACTTTTAGCTAAATATATGTGTCCTAATAGTGTTTTTAGCAACGTGGGACATAAACATGCCTGTTAACATCTCAAAAAATGTGTTTAGGTGTGTTTCGTGACCCTTTAACGTCTAGCCGAACTCAAATAATGTCATCAAACTATTTTAAGTGAGTCTTCATGTGAGAAATTATACAAGAAAAATCATGTTACAGCTACATTTCAGATGCTACAAAAATTGTGACCTATTACTGGAAAATTCCTGACCAGCACTGTTCATCTTGCATGGTGGTTATATATTATCTTCTGTGCTTTACCTCAG
Seq C2 exon
ATGCTTCCTGGAGTGAGAGTTATCATTGTGAACCCAGAGACTAAAGGACCACTAGGAGACTCTCATCTAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350:ENSDART00000019521:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]