GgaINT1011323 @ galGal4
Intron Retention
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:156844-157320:-
Coord C1 exon
chrLGE22C19W28_E50C23:157263-157320
Coord A exon
chrLGE22C19W28_E50C23:156919-157262
Coord C2 exon
chrLGE22C19W28_E50C23:156844-156918
Length
344 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TTCTTTCTTGTGATCTTTAGATT
3' ss Score
9.02
Exon sequences
Seq C1 exon
AGTACGTCTAGTGGAAAGGGGAGCTCCACAAAGTCTGCTGCTTTCAGAATCTGGGAAG
Seq A exon
GTAATTTCATGTTACTCCCCTGCCCCTCGTGATGCTGATGTGTAGTTGGGAATGGTGGTCTTGTGGCTTAGCATGAGGAGTGTTGGTTACACTGCTCCTCTGAAAGGTTACTTTGATTTATAATGGAGTAGAATGCCTTCCCTGTGTGGCTCTTCAGACAGGAAAGGAAATACTTTTGTTCTGATAGTGCTTCACTGTACATGCCCTGACATGTTTTATACATGTTAGTGATTTCCATGGGTGAAACCATGCCTTTGTGGAAATAAATGAGCAGCCTTGGTGTGTTAGTTTTGTGTGAAGATAATTCACAAATTGATTTGCATATTCTTTCTTGTGATCTTTAG
Seq C2 exon
ATTTTACCTGGAGTCAAGGTGGTTATTGTTAATCCGGAGACAAAAGGGCCTCTGGGAGATTCTCATCTTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139:ENSGALT00000009909:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]