BtaINT0049783 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005741 | DLX2
Description
Bos taurus distal-less homeobox 2 (DLX2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192662]
Coordinates
chr2:24489074-24490424:+
Coord C1 exon
chr2:24489074-24489738
Coord A exon
chr2:24489739-24490239
Coord C2 exon
chr2:24490240-24490424
Length
501 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
ACGATTCCATTTCATTGCAGAGA
3' ss Score
7.71
Exon sequences
Seq C1 exon
CCCGCCCGAGCCCGCGCTGGGCAAGGAGCCGAGGAGCCCGAGAGACGGAGAGAGGATGCGGCCGGCGGCAGCTGTCCCGAGCAGTGCACGGTGATCGCCTCCCCCAGAGGAGGAGTTGCCTAGACCGTTGCTACATTTCTTGTTTTCCTCCCCCCTCCCCCTCTGTAATTACATTGGCTGCTGGAGGGGACAGAGAGAGACGGAGGAGGCGCCTCGCTACCCCCCTCGCGCCCGCCACCCCTGCTCTTTCCCGTCCCGGGCCAGGATGACTGGAGTCTTTGACAGTCTGGTGGCTGATATGCACTCGACCCAGATCACGGCCTCCAGCACGTACCACCAGCACCAGCAGCCCCCGAGCGGCGGCGGCGCTGGCCCCGGCGGCAGCAACGGCAGCAGCCTCCACAAGCCTCAGGAGTCGCCCACTCTCCCGGTGTCCACAGCTACCGACAGCAGCTACTACACCAACCAACAACACCCGGCGGGTGGTGGCGGCGGCGGCGGCGGCGGCTCGCCCTACGCGCACATGGGTTCCTACCAGTACCACGCCAGCGGCCTCAACAACGTCCCGTTTTCAGCCAAGAGCGGCTACGATCTGGGCTACACCGCCGCCTACACCTCTTACGCTCCCTACGGGACCAGTTCGTCCCCGGCCAACAACGAACCTG
Seq A exon
GTATGCTTAAAGTTGGCATCACGGGTGCCAAATCGGTCTAGTTACTGGGGGGTGGGGGCGGATAAAAATGTTTGGGGCGGGATCTATCTGGAGCCCTGGCCTTTCACATTGCTTGCTCCCTGCTCGCCTCGCGCCCTTTACCCTCCTAAATCTTCAATCGGCCGAGGGTCACAGGATACGTCCCTCAGGAGGTGGGACCTCAGGTGGTGGCACCAGGCGGCCTCGTCAGCCGAGGTGCATGCCTCACGGTAGCCTCATTTCCCTACCACCTGCTGCTCCTCTATCCAAGGTTTGCGCCGGTCTTCCCCTTCCCAGGAGGGGCCAGCTCCCGGGTTCGTTGGCGGCATGGGTCGGAGCGTTGCAAAGTTGCGCCAGAGCTCAAAGCAGCGTCTCCAATAGCCCGCCTCCCGGCTTAGGCAAAGTTCCACTTTACCCTCCCTGCGGGCGGGCACTCCTGGGCTCCCACGGTTGCATGTTTCTCACGATTCCATTTCATTGCAG
Seq C2 exon
AGAAGGAAGACCTCGAGCCTGAAATCCGGATAGTAAACGGGAAGCCAAAGAAAGTCCGGAAACCTCGAACCATCTACTCCAGTTTCCAGCTGGCGGCTCTTCAGCGGCGTTTCCAAAAGACTCAATACCTGGCACTTCCCGAGCGAGCTGAGCTGGCGGCGTCTCTGGGCCTCACCCAGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005741:ENSBTAT00000046765:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.672 A=NA C2=0.290
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=62.7)
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=67.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACCAACCAACAACACCCG
R:
TCGGGAAGTGCCAGGTATTGA
Band lengths:
350-851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]