MmuINT0050108 @ mm9
Intron Retention
Gene
ENSMUSG00000023391 | Dlx2
Description
distal-less homeobox 2 [Source:MGI Symbol;Acc:MGI:94902]
Coordinates
chr2:71383441-71384811:-
Coord C1 exon
chr2:71384041-71384811
Coord A exon
chr2:71383626-71384040
Coord C2 exon
chr2:71383441-71383625
Length
415 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
CCACTCACTTTTCGTTGCAGACA
3' ss Score
9.2
Exon sequences
Seq C1 exon
GGCAGACAATCGTAAAGCTGCTCGGGGGTCGCTCACCTGCTCCCGCCTCCTGGAGCCCCTACCGGGTCTGACCGCTCTTGCCCCCTCCATTGCCCGCCCCCCGCCCGAGCCGGGCCAGGAGCCGAGAGGTCCGAGAGGCCCGGGAAGGATGCGGCCAGCAGCTGCGGTCCCGAGCCACGCACGGTGATCGCCTCCTCCAGGGGAGGAGGCGCCTAGACCGTAGCCTCATTTCTTGTTTTCCTCTCCCTCCCCCTCCCCGTAATTACATTGGTTGCTGGAAGGGACCCGGAGAGATAGACAGAGGAGGCGCCTCGCATCCCCCTCTCGCCCGCCACCCGTGCTCTTTCCTGTCCCGGGTCAGGATGACTGGAGTCTTTGACAGTCTGGTGGCTGATATGCACTCGACCCAGATCACCGCCTCCAGCACGTACCACCAGCACCAGCAGCCCCCGAGCGGTGCGGGCGCCGGCCCTGGCGGCAACAGCAACAGCAGCAGCAGCAACAGCAGCCTGCACAAGCCCCAGGAGTCGCCAACCCTCCCGGTGTCCACGGCTACGGACAGCAGCTACTACACCAACCAGCAGCACCCGGCGGGCGGCGGCGGCGGGGGGGCCTCGCCCTACGCGCACATGGGCTCCTACCAGTACCACGCCAGCGGCCTCAACAATGTCTCCTACTCCGCCAAAAGCAGCTACGACCTGGGCTACACCGCCGCGTACACCTCCTACGCGCCCTACGGCACCAGTTCGTCTCCGGTCAACAACGAGCCGG
Seq A exon
GTAAGCATCGCAAGCATCTAGGGTGCCCAAGTCACGGGGAGGGACCGGGTAAGCATGGGGTGGGGGGCAGTCCGGAGCTCTAGCCTTGCACTCTGTGCATCTCTTGCTCCCGCCCTGAACTCTGCCCAATCTCCAACTGCACGCGAATCGCAGTTTCTGCCTCTCCACGCTCCGGGGGACAGAGTCGGTGGGCGGTTGGGCCAGTTGGCATGCTGTGGGTAGCGCATAGCTTTGCTGCCCGCCTCTTCTTTCTCTCTTGCACAGCTCCCCCGGGTCCCTTGCAGGGTTCCGTGGCCAGGCCAGTCGGCGCGTGCTGAAGTTGGGAAGGCCTCCTCAAGTCTCTAAAGGCCTCCGCTCCGAACTTTAGGACCGCGGGGTTGGACGGTGGGTGCTCACCACTCACTTTTCGTTGCAG
Seq C2 exon
ACAAGGAAGACCTTGAGCCTGAAATCCGAATAGTGAACGGGAAGCCAAAGAAAGTCCGGAAACCACGCACCATCTACTCCAGTTTCCAGCTGGCGGCCCTTCAACGACGCTTCCAGAAGACCCAGTATCTGGCCCTGCCAGAGCGAGCCGAGCTGGCGGCGTCCCTGGGCCTCACCCAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023391-Dlx2:NM_010054:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=NA C2=0.290
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=59.9)
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=67.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACGGACAGCAGCTACTA
R:
TACTGGGTCTTCTGGAAGCGT
Band lengths:
348-763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: