RnoINT0048270 @ rn6
Intron Retention
Gene
ENSRNOG00000001519 | Dlx2
Description
distal-less homeobox 2 [Source:RGD Symbol;Acc:1304853]
Coordinates
chr3:58180974-58181971:-
Coord C1 exon
chr3:58181563-58181971
Coord A exon
chr3:58181159-58181562
Coord C2 exon
chr3:58180974-58181158
Length
404 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
ACCATTCATTTTCGTTGCAGACA
3' ss Score
9.25
Exon sequences
Seq C1 exon
ATGACTGGAGTCTTTGACAGTCTGGTGGCTGATATGCACTCGACCCAGATCACAGCCTCCAGCACGTACCACCAGCACCAGCAGCCCCCGAGCGGTGCGGGCGCGGGCTCTGGCGGCAGCAGCAACAGCAGCAGCAGCAACAGCAACCTGCACAAGCCCCAGGAGTCGCCAACCCTGCCGGTGTCCACGGCTACCGACAGCAGCTACTACACCAACCAGCAGCACCCGGCGGGTGGCGGCGGCGGGGGGGCCTCGCCCTACGCGCACATGGGCTCCTACCAGTACCACGCCAGCGGCCTCAACAACGTCTCCTACTCCGCCAAAAGCAGCTACGACCTGGGCTACACCGCCGCGTACACTTCCTACGCGCCCTACGGAACCAGTTCGTCCCCAGTCAACAACGAGCCCG
Seq A exon
GTAAGCATAAACTAGCCTCTAGGGTGACCAAGTCGCCCTGGCCACCGGGAGGGACGGGATAAGCGTGGGGTACGGGAGTCCGGAGCTCTAGTCTTGCACTCTGTCCATCTCTTGTTCCTGAACTCTGCCCAATCTCCAGCTGCGCGCGAATCACAGTTTCTCTGTCTCTCCACGCTCCGGGGGATAGAGCCTGAGGGCTGTTGGGCCAATTGGCGTGTTGTGAGTAGCGCATCGCTTTGCTACCCGCCTCTTCTTTCTCTCTTGCACAAGTCTCCCCGGTCCCTTGCAGGGTTCCGTGGCCCGGCCAGTCTGTGCGTGCTGAAGTTGTGAAGGCCTCCTCCAGGCTCTGGCTCTGAACTTTAAGAGGTTGGACGGTGGGTACTCACCATTCATTTTCGTTGCAG
Seq C2 exon
ACAAGGAAGACCTTGAGCCTGAAATCCGAATTGTGAACGGGAAGCCAAAGAAAGTCCGGAAACCACGCACCATCTACTCCAGTTTCCAGCTGGCCGCCCTTCAGCGACGCTTCCAGAAGACCCAGTATCTGGCCCTGCCTGAGCGAGCCGAGCTGGCGGCCTCCCTGGGCCTTACCCAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001519:ENSRNOT00000002076:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=NA C2=0.290
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=59.9)
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=67.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACCGACAGCAGCTACTA
R:
TACTGGGTCTTCTGGAAGCGT
Band lengths:
348-752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]