GgaINT0091522 @ galGal3
Intron Retention
Gene
ENSGALG00000009129 | DLX5_CHICK
Description
NA
Coordinates
chr2:24416409-24417820:-
Coord C1 exon
chr2:24417417-24417820
Coord A exon
chr2:24416594-24417416
Coord C2 exon
chr2:24416409-24416593
Length
823 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCGCCCTTGCGCCCGTGCAGAGA
3' ss Score
7.03
Exon sequences
Seq C1 exon
GCGCCGAGCCGCCTCCCCCGGCCATGTCCGCCTGAGCCCGGCGATCCGCGCTATGACAGCAGTGTTTGACAGAAGGGTCCCCGGCATCAGGTCCTCCGACTTCCAGCCGCCTTTCCAGAGCGCCGCAGCCATGCACCACCCGTCCCAGGAATCTCCCACTTTACCCGAGTCCTCGGCTACGGATTCCGACTACTACAGCCCGACGGGGGCGGCCCCGCACGGCTACTGCTCGCCTACCTCGGCTTCCTACGGCAAAGCGCTCAACCCCTACCAGTACCAGTACGGCATGAACGGCTCCGCCGGCACCTACCCCGCCAAAGCCTACGCGGACTACGGCTACGGCAGCCCCTACCACCAGTACGGAGGAGCCTACGGCCGCGGGCAAAGCTCCGCGGGGCAGCCAG
Seq A exon
GTGAGAGCGGGGTGAGGGACGCGGGGACGGGGCTTCCGCGGCCGCGAGGAAAAAAGAAAAATAATCATAGAGAAACGATAGAAAGCAATCGACGGACAAAAAAATTAAAGAAACCTTTGAAAATCAGAAAAGAAAGAGAGGAAGTTTTTAAAAAAGTGGAACGCCGGGTCCGCTTTTCTCAGCGCGAACCCCGTCGGAAAGGGCTCCGGAGAGAGGCGGCCGTCGGTCAGCCTCACTCGGGCCCCGCTGCTGCCTTCCCCCTCCGCGGGGCGAGAGCACGGCCGGCTCGTGGTGCGCCCCGGAGCCGAGGAGAGCTGCCGTCCCCGCTCGGGGAGGGGGGGGAGCGGAGCGGGGCCGGGGGGGTCGTGCCAGAGAGCGCCGCGATTTTAGCGCTCTGCGCTGCTTCTTTGTAAGAAAAGATATATTAAAAAAATACAAAGGAGGATAGGTGGGGGTAAAGAAGGAAGGAAATAACGAGAGCACGCCGAGCGCCCGGCGCTCGCTTCGGGACGAAAGCGGCCGCGGCGGAGCTCGGGACGCGGTGCGGTGCCGGAGCGGTGCGGAGGAGCGAGCGCTGTCCGGGCCGGGCCCTTCCCTTCCCTTCCCTTCTCTTCCCCTCCCGGCGGAACGCGGGGAGCCGGGGCCGCGCGTGGGGCTCCCGCGGCGCCCTTCCTTGCGGGGAGCCCGGCGGGCAGGGAGGGAGCGGCCCCCCGGAGCGGGCGGCCCGGGGGGAGCCGCGGGGGCCCGTCGGGACGGCGCCGCCGCCCGGCCCGCGCCTTAACGTCTGCGTGTGTGTCTCTCTCCCGCCCTTGCGCCCGTGCAG
Seq C2 exon
AGAAGGAGGTGGCGGAGCCCGAGGTGAGGATGGTGAACGGCAAGCCAAAGAAAGTGCGCAAACCGCGGACTATTTATTCCAGCTTTCAGCTGGCGGCGTTGCAGAGGAGGTTCCAGAAGACCCAATACCTCGCCCTGCCCGAGCGGGCCGAGCTGGCCGCCTCGCTGGGACTCACGCAGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009129:ENSGALT00000015249:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=NA C2=0.277
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=72.9)
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=67.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGACTACTACAGCCCGAC
R:
GCGAGGTATTGGGTCTTCTGG
Band lengths:
354-1177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]